Variant report

Variant	rs10116936
Chromosome Location	chr9:21277550-21277551
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10113879	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10117202	0.86[ASN][1000 genomes]
rs10120117	0.88[ASN][1000 genomes]
rs10120675	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10122881	0.98[ASN][1000 genomes]
rs10124167	0.89[ASN][1000 genomes]
rs10757210	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10811522	0.92[YRI][hapmap];0.82[AFR][1000 genomes]
rs10811527	0.89[ASN][1000 genomes]
rs10964943	0.92[ASN][1000 genomes]
rs10964952	1.00[ASN][1000 genomes]
rs10964953	0.88[YRI][hapmap];0.85[AFR][1000 genomes]
rs10964955	0.84[AFR][1000 genomes]
rs10964957	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10964959	1.00[ASN][1000 genomes]
rs10964961	0.87[ASN][1000 genomes]
rs1112783	0.99[ASN][1000 genomes]
rs1330312	0.89[ASN][1000 genomes]
rs1590897	1.00[ASN][1000 genomes]
rs2094787	0.91[YRI][hapmap];0.84[AFR][1000 genomes]
rs2094788	0.95[YRI][hapmap];0.88[AFR][1000 genomes]
rs4568686	0.98[ASN][1000 genomes]
rs4977714	0.87[ASN][1000 genomes]
rs604762	0.81[CHB][hapmap]
rs614541	0.81[CHB][hapmap]
rs6475527	0.92[ASN][1000 genomes]
rs7032044	1.00[ASN][1000 genomes]
rs7849902	1.00[ASN][1000 genomes]
rs7866640	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817218	chr9:20687769-21309177	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv892724	chr9:20690244-21517302	Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
3	nsv892734	chr9:21108817-21323089	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	esv2761295	chr9:21258108-21281544	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3447912	chr9:21260652-21290903	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv430006	chr9:21262516-21280782	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10116936	KLHL9	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21276600-21281200	Weak transcription	Primary neutrophils fromperipheralblood	blood

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