Variant report

Variant	rs7866640
Chromosome Location	chr9:21311571-21311572
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10116540	0.89[EUR][1000 genomes]
rs10116936	0.88[ASN][1000 genomes]
rs10117202	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10120117	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10122881	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10124167	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10124609	0.80[EUR][1000 genomes]
rs10738591	0.96[EUR][1000 genomes]
rs10811497	0.82[EUR][1000 genomes]
rs10811508	0.82[EUR][1000 genomes]
rs10811509	0.83[EUR][1000 genomes]
rs10811514	0.87[EUR][1000 genomes]
rs10811527	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10811529	0.98[EUR][1000 genomes]
rs10964918	0.80[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10964928	0.89[EUR][1000 genomes]
rs10964929	0.85[EUR][1000 genomes]
rs10964930	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10964932	0.89[EUR][1000 genomes]
rs10964933	0.89[EUR][1000 genomes]
rs10964934	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10964943	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10964952	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10964957	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10964959	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10964961	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1112783	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12551190	0.89[EUR][1000 genomes]
rs12552812	0.85[EUR][1000 genomes]
rs12553763	0.89[EUR][1000 genomes]
rs12553910	0.94[EUR][1000 genomes]
rs12555749	0.84[EUR][1000 genomes]
rs1330312	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1330314	0.98[EUR][1000 genomes]
rs1330317	0.82[EUR][1000 genomes]
rs1411436	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1590897	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1590898	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1928854	0.89[EUR][1000 genomes]
rs1928855	0.88[EUR][1000 genomes]
rs1928856	0.87[EUR][1000 genomes]
rs1952690	0.96[EUR][1000 genomes]
rs2007448	0.82[EUR][1000 genomes]
rs2225329	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs28437205	0.88[EUR][1000 genomes]
rs2988573	0.95[EUR][1000 genomes]
rs2988574	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2990140	0.94[EUR][1000 genomes]
rs4007646	0.81[EUR][1000 genomes]
rs4112794	0.89[EUR][1000 genomes]
rs4568686	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4582643	0.97[EUR][1000 genomes]
rs4628333	0.89[EUR][1000 genomes]
rs4977714	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4978069	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs56035072	0.83[EUR][1000 genomes]
rs57122438	0.89[EUR][1000 genomes]
rs57146220	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs57371737	0.95[EUR][1000 genomes]
rs583396	0.95[EUR][1000 genomes]
rs597440	0.91[EUR][1000 genomes]
rs604762	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs612966	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs614541	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs618507	0.96[EUR][1000 genomes]
rs637700	0.95[EUR][1000 genomes]
rs6475510	0.81[EUR][1000 genomes]
rs6475527	0.82[ASN][1000 genomes]
rs653778	0.87[EUR][1000 genomes]
rs660675	0.91[EUR][1000 genomes]
rs667214	0.94[EUR][1000 genomes]
rs667635	0.94[EUR][1000 genomes]
rs681680	0.95[EUR][1000 genomes]
rs7032044	0.88[ASN][1000 genomes]
rs7043560	0.82[EUR][1000 genomes]
rs7046898	0.82[EUR][1000 genomes]
rs7047240	0.82[EUR][1000 genomes]
rs73418252	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs768848	0.82[EUR][1000 genomes]
rs768849	0.82[EUR][1000 genomes]
rs7848803	0.87[EUR][1000 genomes]
rs7849902	0.88[ASN][1000 genomes]
rs7852809	0.82[EUR][1000 genomes]
rs7857863	0.85[EUR][1000 genomes]
rs7866359	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892724	chr9:20690244-21517302	Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
2	nsv892734	chr9:21108817-21323089	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv613757	chr9:21289923-21316649	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh	TF binding region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21309000-21312000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr9:21309800-21322600	Weak transcription	Brain Substantia Nigra	brain
3	chr9:21310400-21311800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:21311400-21311600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived

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