Variant report

Variant	rs653778
Chromosome Location	chr9:21368097-21368098
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10117202	0.87[EUR][1000 genomes]
rs10120117	0.85[EUR][1000 genomes]
rs10122881	0.85[EUR][1000 genomes]
rs10124167	0.85[EUR][1000 genomes]
rs10738591	0.83[EUR][1000 genomes]
rs10811527	0.85[EUR][1000 genomes]
rs10811529	0.85[EUR][1000 genomes]
rs10964943	0.82[EUR][1000 genomes]
rs10964952	0.85[EUR][1000 genomes]
rs10964957	0.84[EUR][1000 genomes]
rs10964959	0.85[EUR][1000 genomes]
rs10964961	0.85[EUR][1000 genomes]
rs1112783	0.85[EUR][1000 genomes]
rs12553910	0.82[EUR][1000 genomes]
rs1330312	0.85[EUR][1000 genomes]
rs1330314	0.85[EUR][1000 genomes]
rs1590897	0.85[EUR][1000 genomes]
rs1952690	0.83[EUR][1000 genomes]
rs2988573	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2988574	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2990140	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2990141	0.87[EUR][1000 genomes]
rs4568686	0.85[EUR][1000 genomes]
rs4582643	0.88[EUR][1000 genomes]
rs4977714	0.83[EUR][1000 genomes]
rs57371737	0.86[EUR][1000 genomes]
rs583396	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs597440	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs604762	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs612966	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs614541	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs617881	0.85[EUR][1000 genomes]
rs618507	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs637700	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs647167	0.85[EUR][1000 genomes]
rs660675	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs662831	0.87[EUR][1000 genomes]
rs667214	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs667635	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs674189	0.87[EUR][1000 genomes]
rs681680	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7866640	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892724	chr9:20690244-21517302	Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
2	nsv892736	chr9:21327141-21391698	Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv892737	chr9:21352862-21408824	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2752289	chr9:21361957-21499624	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv972300	chr9:21367212-21369885	Bivalent Enhancer Enhancers Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21367600-21368200	Enhancers	GM12878-XiMat	blood

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