Variant report

Variant	rs2988573
Chromosome Location	chr9:21350620-21350621
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10116540	0.84[EUR][1000 genomes]
rs10117202	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10120117	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10122881	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10124167	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10738591	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10811514	0.82[EUR][1000 genomes]
rs10811527	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10811529	0.93[EUR][1000 genomes]
rs10964918	0.82[EUR][1000 genomes]
rs10964928	0.84[EUR][1000 genomes]
rs10964929	0.80[EUR][1000 genomes]
rs10964930	0.84[EUR][1000 genomes]
rs10964932	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10964933	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10964934	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10964943	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10964952	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10964957	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10964959	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10964961	0.93[EUR][1000 genomes]
rs1112783	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12551190	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12552812	0.81[EUR][1000 genomes]
rs12553763	0.84[EUR][1000 genomes]
rs12553910	0.89[EUR][1000 genomes]
rs1330312	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1330314	0.93[EUR][1000 genomes]
rs1330317	0.83[AMR][1000 genomes]
rs1411436	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1590897	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1590898	0.81[AMR][1000 genomes]
rs1928854	0.84[EUR][1000 genomes]
rs1928855	0.83[EUR][1000 genomes]
rs1928856	0.82[EUR][1000 genomes]
rs1952690	0.90[EUR][1000 genomes]
rs2225329	0.81[AMR][1000 genomes]
rs28437205	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2988574	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2990140	0.89[AFR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2990141	0.80[EUR][1000 genomes]
rs4112794	0.84[EUR][1000 genomes]
rs4568686	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4582643	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4628333	0.84[EUR][1000 genomes]
rs4977714	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4978069	0.81[AMR][1000 genomes]
rs57122438	0.84[EUR][1000 genomes]
rs57146220	0.84[EUR][1000 genomes]
rs57371737	0.96[EUR][1000 genomes]
rs583396	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs597440	0.88[AFR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs604762	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs612966	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs614541	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs617881	0.80[EUR][1000 genomes]
rs618507	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs637700	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs647167	0.80[EUR][1000 genomes]
rs653778	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs660675	0.89[AFR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs662831	0.80[EUR][1000 genomes]
rs667214	0.89[AFR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs667635	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs674189	0.80[EUR][1000 genomes]
rs681680	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7032044	0.83[AMR][1000 genomes]
rs73418252	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7848803	0.82[EUR][1000 genomes]
rs7849902	0.83[AMR][1000 genomes]
rs7857863	0.81[EUR][1000 genomes]
rs7866640	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892724	chr9:20690244-21517302	Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
2	nsv892736	chr9:21327141-21391698	Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv968602	chr9:21349789-21352300	Bivalent Enhancer Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21350600-21351000	Enhancers	GM12878-XiMat	blood

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