Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12007684	0.90[YRI][hapmap]
rs12011840	0.83[JPT][hapmap]
rs12014732	0.83[JPT][hapmap]
rs12014801	0.83[JPT][hapmap]
rs12116136	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[YRI][hapmap]
rs12556336	0.91[YRI][hapmap]
rs12556999	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12557973	0.90[YRI][hapmap]
rs418001	1.00[CEU][hapmap]
rs4252206	1.00[CEU][hapmap]
rs5942149	1.00[CEU][hapmap]
rs5942150	1.00[CEU][hapmap]
rs5984904	1.00[CEU][hapmap]
rs6618898	1.00[CEU][hapmap]
rs6618899	1.00[CEU][hapmap]
rs6618928	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap]
rs6618934	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap]
rs6652292	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs6652625	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap]
rs6652627	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs6652628	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs6652629	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap]
rs6652631	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap]
rs6652632	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs7066634	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs7877373	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432350	chrX:91158935-91590765	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv3435339	chrX:91427773-91539017	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv532885	chrX:91428554-92377178	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv533436	chrX:91434301-91519622	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:91511400-91512200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chrX:91511400-91512200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
3	chrX:91511400-91513400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
4	chrX:91511400-91513400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
5	chrX:91511400-91514600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
6	chrX:91511400-91515200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell

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