Variant report

Variant	rs6652628
Chromosome Location	chrX:91514014-91514015
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs118218	1.00[TSI][hapmap]
rs12011840	0.83[JPT][hapmap]
rs12014732	0.83[JPT][hapmap]
rs12014801	0.83[JPT][hapmap]
rs12116136	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap]
rs12556807	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs12556999	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2025088	1.00[TSI][hapmap]
rs2025090	1.00[TSI][hapmap]
rs373438	1.00[TSI][hapmap]
rs382841	1.00[TSI][hapmap]
rs393785	1.00[TSI][hapmap]
rs410882	1.00[TSI][hapmap]
rs418001	1.00[CEU][hapmap]
rs4252206	1.00[CEU][hapmap]
rs4279764	1.00[TSI][hapmap]
rs4281262	1.00[TSI][hapmap]
rs435669	1.00[TSI][hapmap]
rs4893173	1.00[TSI][hapmap]
rs5942141	1.00[TSI][hapmap]
rs5942149	1.00[CEU][hapmap]
rs5942150	1.00[CEU][hapmap]
rs5942153	1.00[TSI][hapmap]
rs5942183	1.00[TSI][hapmap]
rs5942186	1.00[TSI][hapmap]
rs5984904	1.00[CEU][hapmap]
rs5984905	1.00[TSI][hapmap]
rs6418101	1.00[TSI][hapmap]
rs6618898	1.00[CEU][hapmap]
rs6618899	1.00[CEU][hapmap]
rs6618928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6618934	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs6652292	1.00[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap]
rs6652625	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs6652627	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs6652629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6652631	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6652632	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7066634	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7877373	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432350	chrX:91158935-91590765	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv3435339	chrX:91427773-91539017	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv532885	chrX:91428554-92377178	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv533436	chrX:91434301-91519622	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:91511400-91514600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
2	chrX:91511400-91515200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
3	chrX:91513400-91515400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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