Variant report
| Variant | rs4252206 |
|---|---|
| Chromosome Location | chrX:91456458-91456459 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs12116136 | 1.00[CEU][hapmap] |
| rs12556807 | 1.00[CEU][hapmap] |
| rs12556999 | 1.00[CEU][hapmap] |
| rs418001 | 1.00[CEU][hapmap] |
| rs5942149 | 1.00[CEU][hapmap] |
| rs5942150 | 1.00[CEU][hapmap] |
| rs5984162 | 1.00[MKK][hapmap] |
| rs5984904 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap] |
| rs6618898 | 1.00[CEU][hapmap];1.00[TSI][hapmap] |
| rs6618899 | 1.00[CEU][hapmap];1.00[TSI][hapmap] |
| rs6618928 | 1.00[CEU][hapmap] |
| rs6618934 | 1.00[CEU][hapmap];0.81[JPT][hapmap] |
| rs6652292 | 1.00[CEU][hapmap] |
| rs6652625 | 1.00[CEU][hapmap] |
| rs6652627 | 1.00[CEU][hapmap] |
| rs6652628 | 1.00[CEU][hapmap] |
| rs6652629 | 1.00[CEU][hapmap] |
| rs6652631 | 1.00[CEU][hapmap] |
| rs6652632 | 1.00[CEU][hapmap] |
| rs7066634 | 1.00[CEU][hapmap] |
| rs7877373 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv432350 | chrX:91158935-91590765 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv3435339 | chrX:91427773-91539017 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv532885 | chrX:91428554-92377178 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv533436 | chrX:91434301-91519622 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chrX:91450000-91461600 | Weak transcription | iPS-18 Cell Line | embryonic stem cell |
| 2 | chrX:91456200-91458600 | Weak transcription | HUES6 Cell Line | embryonic stem cell |
