Variant report

Variant	rs12563592
Chromosome Location	chr1:95576760-95576761
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:95537102..95539185-chr1:95575795..95577296,2	K562	blood:
2	chr1:95575724..95579926-chr1:95579935..95584295,5	K562	blood:
3	chr1:95575968..95579452-chr1:95580350..95584139,5	K562	blood:

Variant related genes	Relation type
ENSG00000152078	Chromatin interaction
ENSG00000172339	Chromatin interaction
ENSG00000271092	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1023330	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10735790	0.81[EUR][1000 genomes]
rs10874902	0.81[EUR][1000 genomes]
rs11165299	0.84[EUR][1000 genomes]
rs11585462	0.83[EUR][1000 genomes]
rs11591183	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12563424	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12569038	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12569207	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12741128	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12748237	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12751774	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs34280926	0.81[EUR][1000 genomes]
rs35678413	0.83[EUR][1000 genomes]
rs35888232	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4245670	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4309032	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4339907	0.82[EUR][1000 genomes]
rs4344373	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4390223	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4630159	0.84[EUR][1000 genomes]
rs4949965	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4950056	0.82[EUR][1000 genomes]
rs4950057	0.86[EUR][1000 genomes]
rs4950058	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4950077	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4950083	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6683112	0.81[EUR][1000 genomes]
rs6687388	0.81[EUR][1000 genomes]
rs9437689	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9437812	0.84[EUR][1000 genomes]
rs9437813	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9661031	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830636	chr1:95495849-95703126	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95576000-95576800	Enhancers	K562	blood

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