Variant report
| Variant | rs4950077 |
|---|---|
| Chromosome Location | chr1:95579084-95579085 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | STAT3 | chr1:95579044-95579115 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:95577577..95580563-chr1:95632863..95634936,2 | K562 | blood: | |
| 2 | chr1:95577752..95581790-chr1:95581855..95584357,3 | MCF-7 | breast: | |
| 3 | chr1:95575724..95579926-chr1:95579935..95584295,5 | K562 | blood: | |
| 4 | chr1:95575968..95579452-chr1:95580350..95584139,5 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| TMEM56-RWDD3 | TF binding region |
| TMEM56 | TF binding region |
| ENSG00000152078 | Chromatin interaction |
| ENSG00000271092 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1023330 | 1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10735790 | 0.91[CHB][hapmap] |
| rs10874902 | 0.92[CHB][hapmap] |
| rs11585462 | 0.92[CHB][hapmap] |
| rs12563424 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12563592 | 0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12741128 | 0.92[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12748237 | 0.88[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2391388 | 0.84[CHB][hapmap];0.82[JPT][hapmap] |
| rs4245670 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4339907 | 0.92[CHB][hapmap] |
| rs4344373 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4630159 | 0.92[CHB][hapmap] |
| rs4949965 | 0.92[CHB][hapmap] |
| rs4950058 | 0.92[CHB][hapmap] |
| rs4950083 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6675668 | 0.92[CHB][hapmap] |
| rs6687388 | 0.92[CHB][hapmap] |
| rs6687450 | 0.89[CHB][hapmap] |
| rs7537374 | 0.84[CHB][hapmap] |
| rs9437689 | 0.91[CHB][hapmap];0.81[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830636 | chr1:95495849-95703126 | Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:95578000-95581000 | Enhancers | K562 | blood |
