Variant report

Variant	rs6687450
Chromosome Location	chr1:95480576-95480577
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10493880	0.95[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10735790	1.00[CEU][hapmap];0.89[CHB][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10782996	0.96[ASN][1000 genomes]
rs10874902	0.92[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11165299	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1146461	0.80[EUR][1000 genomes]
rs11585462	1.00[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11591183	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12569038	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12569207	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1265169	0.88[CHB][hapmap];0.80[EUR][1000 genomes]
rs12741128	1.00[CEU][hapmap];0.89[CHB][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12748237	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12751774	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2391388	0.89[CHB][hapmap];0.90[JPT][hapmap];0.98[ASN][1000 genomes]
rs2391389	0.98[ASN][1000 genomes]
rs2766010	0.95[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2766011	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2797616	0.82[AMR][1000 genomes]
rs2797622	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2893274	0.91[ASN][1000 genomes]
rs34280926	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35678413	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35888232	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4309032	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4339907	1.00[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4390223	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4630159	1.00[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4847220	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4949965	1.00[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4950056	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4950057	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4950058	1.00[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4950077	0.89[CHB][hapmap]
rs61774262	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6675668	0.89[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs6683112	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6687388	1.00[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.81[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6698046	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7533303	1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs7537374	0.89[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs7539139	0.98[ASN][1000 genomes]
rs7547662	1.00[CHB][hapmap];0.80[JPT][hapmap];0.88[ASN][1000 genomes]
rs9437665	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9437672	0.85[ASN][1000 genomes]
rs9437689	0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9437810	0.85[ASN][1000 genomes]
rs9437812	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9437813	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9661031	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95447000-95490800	Weak transcription	Fetal Intestine Large	intestine
2	chr1:95448200-95491000	Weak transcription	Primary B cells from cord blood	blood
3	chr1:95468600-95482400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:95469200-95487200	Weak transcription	Small Intestine	intestine
5	chr1:95473600-95481200	Weak transcription	Aorta	Aorta
6	chr1:95476000-95490800	Weak transcription	Primary T cells from cord blood	blood
7	chr1:95478200-95480800	Enhancers	Adipose Nuclei	Adipose
8	chr1:95478600-95484000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:95478800-95485600	Enhancers	HepG2	liver
10	chr1:95479200-95480600	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr1:95479200-95480800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:95479400-95480600	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr1:95479400-95481400	Enhancers	Brain Hippocampus Middle	brain
14	chr1:95479400-95485000	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr1:95479600-95480600	Enhancers	Fetal Intestine Small	intestine
16	chr1:95479600-95480600	Weak transcription	HMEC	breast
17	chr1:95479600-95481000	Enhancers	Brain Substantia Nigra	brain
18	chr1:95479600-95481400	Enhancers	Brain Cingulate Gyrus	brain
19	chr1:95479800-95480600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr1:95479800-95480800	Enhancers	Pancreas	Pancrea
21	chr1:95479800-95481400	Enhancers	Brain Anterior Caudate	brain
22	chr1:95479800-95483600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr1:95479800-95484400	Weak transcription	Hela-S3	cervix
24	chr1:95480000-95480600	Enhancers	Right Atrium	heart
25	chr1:95480000-95480800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr1:95480000-95481000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr1:95480000-95481000	Weak transcription	HSMMtube	muscle
28	chr1:95480000-95482600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr1:95480000-95483600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr1:95480000-95484000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr1:95480000-95484000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr1:95480000-95484000	Weak transcription	Fetal Lung	lung
33	chr1:95480000-95484000	Weak transcription	HSMM	muscle
34	chr1:95480000-95484000	Weak transcription	Osteobl	bone
35	chr1:95480000-95484200	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr1:95480000-95484200	Weak transcription	A549	lung
37	chr1:95480000-95487000	Weak transcription	Brain Angular Gyrus	brain
38	chr1:95480000-95508800	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr1:95480200-95480600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr1:95480200-95480600	Weak transcription	Fetal Stomach	stomach
41	chr1:95480200-95480600	Weak transcription	Left Ventricle	heart
42	chr1:95480200-95480600	Weak transcription	Stomach Mucosa	stomach
43	chr1:95480200-95480800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr1:95480200-95481200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr1:95480200-95483000	Weak transcription	Fetal Muscle Leg	muscle
46	chr1:95480200-95483400	Weak transcription	NHLF	lung
47	chr1:95480200-95484000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr1:95480200-95484000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr1:95480200-95484000	Weak transcription	Gastric	stomach
50	chr1:95480200-95484400	Weak transcription	Fetal Kidney	kidney

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