Variant report

Variant	rs1146461
Chromosome Location	chr1:95408492-95408493
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10493880	0.87[EUR][1000 genomes]
rs1146460	0.80[EUR][1000 genomes]
rs1146465	0.80[EUR][1000 genomes]
rs1265169	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2766010	0.82[CHB][hapmap];0.83[EUR][1000 genomes]
rs2766011	0.83[EUR][1000 genomes]
rs4847220	0.82[CHB][hapmap];0.81[EUR][1000 genomes]
rs6687450	0.88[CHB][hapmap];0.80[EUR][1000 genomes]
rs6698046	0.82[CHB][hapmap];0.82[EUR][1000 genomes]
rs7533303	0.82[CHB][hapmap]
rs7547662	0.82[CHB][hapmap]
rs860873	0.88[JPT][hapmap]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95394000-95415600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr1:95395400-95410400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:95395600-95412400	Weak transcription	Colonic Mucosa	Colon
4	chr1:95395600-95412400	Weak transcription	Pancreas	Pancrea
5	chr1:95395600-95416400	Weak transcription	Brain Hippocampus Middle	brain
6	chr1:95395800-95408600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr1:95399400-95412200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr1:95399400-95412400	Weak transcription	Fetal Stomach	stomach
9	chr1:95399400-95415400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr1:95399400-95418800	Weak transcription	Ovary	ovary
11	chr1:95402400-95419400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr1:95402600-95412400	Weak transcription	Stomach Mucosa	stomach
13	chr1:95402600-95412600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:95402800-95412200	Weak transcription	Fetal Heart	heart
15	chr1:95402800-95415400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr1:95403000-95408600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr1:95404200-95410200	Weak transcription	Gastric	stomach
18	chr1:95404200-95412200	Weak transcription	Fetal Muscle Leg	muscle
19	chr1:95404200-95412400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr1:95404200-95412400	Weak transcription	Right Atrium	heart
21	chr1:95404200-95412400	Weak transcription	HSMMtube	muscle
22	chr1:95404200-95421400	Weak transcription	Aorta	Aorta
23	chr1:95404400-95411200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr1:95404400-95415200	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr1:95405000-95412200	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr1:95405000-95415600	Weak transcription	NH-A	brain
27	chr1:95405200-95412400	Weak transcription	Left Ventricle	heart
28	chr1:95406000-95409400	Strong transcription	Cortex derived primary cultured neurospheres	brain
29	chr1:95406000-95419400	Weak transcription	Fetal Kidney	kidney
30	chr1:95406600-95412400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr1:95406600-95412400	Weak transcription	HSMM	muscle
32	chr1:95407200-95408600	Enhancers	Liver	Liver
33	chr1:95407600-95408600	Flanking Active TSS	A549	lung
34	chr1:95407600-95409200	Enhancers	HepG2	liver
35	chr1:95408000-95409800	Weak transcription	Small Intestine	intestine
36	chr1:95408400-95411000	Enhancers	Duodenum Mucosa	Duodenum
37	chr1:95408400-95412000	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr1:95408400-95420000	Weak transcription	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links