Variant report

Variant	rs1146460
Chromosome Location	chr1:95408920-95408921
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1132	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.91[MKK][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1146461	0.80[EUR][1000 genomes]
rs1146465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12137644	0.81[EUR][1000 genomes]
rs1246351	0.81[EUR][1000 genomes]
rs1265169	0.80[EUR][1000 genomes]
rs1271952	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7518326	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs767015	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.91[MKK][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1146460	BRDT	cis	cerebellum	SCAN

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95394000-95415600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr1:95395400-95410400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:95395600-95412400	Weak transcription	Colonic Mucosa	Colon
4	chr1:95395600-95412400	Weak transcription	Pancreas	Pancrea
5	chr1:95395600-95416400	Weak transcription	Brain Hippocampus Middle	brain
6	chr1:95399400-95412200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr1:95399400-95412400	Weak transcription	Fetal Stomach	stomach
8	chr1:95399400-95415400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr1:95399400-95418800	Weak transcription	Ovary	ovary
10	chr1:95402400-95419400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr1:95402600-95412400	Weak transcription	Stomach Mucosa	stomach
12	chr1:95402600-95412600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr1:95402800-95412200	Weak transcription	Fetal Heart	heart
14	chr1:95402800-95415400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr1:95404200-95410200	Weak transcription	Gastric	stomach
16	chr1:95404200-95412200	Weak transcription	Fetal Muscle Leg	muscle
17	chr1:95404200-95412400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr1:95404200-95412400	Weak transcription	Right Atrium	heart
19	chr1:95404200-95412400	Weak transcription	HSMMtube	muscle
20	chr1:95404200-95421400	Weak transcription	Aorta	Aorta
21	chr1:95404400-95411200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr1:95404400-95415200	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr1:95405000-95412200	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr1:95405000-95415600	Weak transcription	NH-A	brain
25	chr1:95405200-95412400	Weak transcription	Left Ventricle	heart
26	chr1:95406000-95409400	Strong transcription	Cortex derived primary cultured neurospheres	brain
27	chr1:95406000-95419400	Weak transcription	Fetal Kidney	kidney
28	chr1:95406600-95412400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr1:95406600-95412400	Weak transcription	HSMM	muscle
30	chr1:95407600-95409200	Enhancers	HepG2	liver
31	chr1:95408000-95409800	Weak transcription	Small Intestine	intestine
32	chr1:95408400-95411000	Enhancers	Duodenum Mucosa	Duodenum
33	chr1:95408400-95412000	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr1:95408400-95420000	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr1:95408600-95409600	Enhancers	A549	lung
36	chr1:95408600-95412400	Weak transcription	Liver	Liver

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