Variant report

Variant	rs767015
Chromosome Location	chr1:95396932-95396933
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95387353..95389524-chr1:95396691..95399201,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC44A3-1	chr1:95392928-95397328	NONHSAT004625

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1132	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1146460	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1146465	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1271952	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7518326	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs767015	FNBP1L	cis	cerebellum	SCAN

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95393400-95401800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr1:95393600-95404000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr1:95394000-95415600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr1:95395400-95399200	Weak transcription	Brain Germinal Matrix	brain
5	chr1:95395400-95400200	Weak transcription	HUVEC	blood vessel
6	chr1:95395400-95400600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:95395400-95400600	Weak transcription	A549	lung
8	chr1:95395400-95400600	Weak transcription	Osteobl	bone
9	chr1:95395400-95400800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr1:95395400-95401800	Weak transcription	Brain Anterior Caudate	brain
11	chr1:95395400-95404000	Weak transcription	Brain Angular Gyrus	brain
12	chr1:95395400-95410400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr1:95395600-95397000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr1:95395600-95397400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr1:95395600-95397600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr1:95395600-95397600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr1:95395600-95398000	Weak transcription	Fetal Stomach	stomach
18	chr1:95395600-95398600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr1:95395600-95398600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr1:95395600-95398600	Weak transcription	Adipose Nuclei	Adipose
21	chr1:95395600-95398600	Weak transcription	Aorta	Aorta
22	chr1:95395600-95398600	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr1:95395600-95398800	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr1:95395600-95398800	Weak transcription	Left Ventricle	heart
25	chr1:95395600-95400400	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr1:95395600-95400400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr1:95395600-95400400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr1:95395600-95400600	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr1:95395600-95400600	Weak transcription	NH-A	brain
30	chr1:95395600-95400800	Weak transcription	Brain Substantia Nigra	brain
31	chr1:95395600-95400800	Weak transcription	Fetal Kidney	kidney
32	chr1:95395600-95401200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr1:95395600-95401400	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr1:95395600-95401400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr1:95395600-95401400	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr1:95395600-95401800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr1:95395600-95401800	Weak transcription	Colon Smooth Muscle	Colon
38	chr1:95395600-95401800	Weak transcription	Lung	lung
39	chr1:95395600-95401800	Weak transcription	Rectal Smooth Muscle	rectum
40	chr1:95395600-95401800	Weak transcription	NHLF	lung
41	chr1:95395600-95402000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr1:95395600-95403400	Weak transcription	Right Atrium	heart
43	chr1:95395600-95403800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr1:95395600-95403800	Weak transcription	Gastric	stomach
45	chr1:95395600-95403800	Weak transcription	Right Ventricle	heart
46	chr1:95395600-95404200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr1:95395600-95407000	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr1:95395600-95412400	Weak transcription	Colonic Mucosa	Colon
49	chr1:95395600-95412400	Weak transcription	Pancreas	Pancrea
50	chr1:95395600-95416400	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links