Variant report

Variant	rs1132
Chromosome Location	chr1:95394352-95394353
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:95390227-95394539	HepG2	liver:	n/a	n/a
2	POLR2A	chr1:95389178-95394521	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr1:95394336-95394465	H1-hESC	embryonic stem cell:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC44A3-1	chr1:95392928-95397328	NONHSAT004625

Variant related genes	Relation type
CNN3	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1146460	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1146465	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1271952	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7518326	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs767015	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1132	FNBP1L	cis	cerebellum	SCAN

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95387000-95395400	Active TSS	Aorta	Aorta
2	chr1:95389600-95395000	Active TSS	Ovary	ovary
3	chr1:95389600-95395000	Active TSS	Right Atrium	heart
4	chr1:95389800-95395200	Active TSS	HSMMtube	muscle
5	chr1:95390000-95394600	Active TSS	Lung	lung
6	chr1:95390200-95395400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr1:95390400-95394400	Active TSS	H1 Cell Line	embryonic stem cell
8	chr1:95390400-95394400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr1:95390800-95394400	Active TSS	Colon Smooth Muscle	Colon
10	chr1:95390800-95394400	Active TSS	A549	lung
11	chr1:95390800-95394400	Bivalent/Poised TSS	HepG2	liver
12	chr1:95390800-95395000	Active TSS	GM12878-XiMat	blood
13	chr1:95391000-95394600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
14	chr1:95391000-95395800	Active TSS	HSMM	muscle
15	chr1:95392600-95395000	Active TSS	Colonic Mucosa	Colon
16	chr1:95392800-95394400	Active TSS	Psoas Muscle	Psoas
17	chr1:95393000-95394600	Flanking Active TSS	NH-A	brain
18	chr1:95393200-95394600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
19	chr1:95393200-95394600	Flanking Active TSS	Fetal Muscle Leg	muscle
20	chr1:95393200-95395200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr1:95393200-95395400	Flanking Active TSS	NHDF-Ad	bronchial
22	chr1:95393200-95395400	Flanking Active TSS	Osteobl	bone
23	chr1:95393200-95395600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr1:95393200-95395600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
25	chr1:95393200-95395600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr1:95393200-95395600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
27	chr1:95393200-95395600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
28	chr1:95393200-95395600	Flanking Active TSS	Liver	Liver
29	chr1:95393200-95395600	Flanking Active TSS	Stomach Smooth Muscle	stomach
30	chr1:95393400-95394400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr1:95393400-95394600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr1:95393400-95394600	Enhancers	Placenta Amnion	Placenta Amnion
33	chr1:95393400-95395000	Weak transcription	Gastric	stomach
34	chr1:95393400-95395400	Enhancers	Placenta	Placenta
35	chr1:95393400-95395600	Enhancers	Pancreas	Pancrea
36	chr1:95393400-95395800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr1:95393400-95395800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
38	chr1:95393400-95401800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr1:95393600-95394400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
40	chr1:95393600-95394600	Flanking Active TSS	H9 Cell Line	embryonic stem cell
41	chr1:95393600-95394600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
42	chr1:95393600-95395200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr1:95393600-95395400	Active TSS	Brain Germinal Matrix	brain
44	chr1:95393600-95395400	Flanking Active TSS	Brain Hippocampus Middle	brain
45	chr1:95393600-95395600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr1:95393600-95395600	Flanking Active TSS	Rectal Smooth Muscle	rectum
47	chr1:95393600-95395800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr1:95393600-95404000	Weak transcription	Primary hematopoietic stem cells	blood
49	chr1:95393800-95394400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr1:95393800-95395000	Weak transcription	Spleen	Spleen

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