Variant report

Variant	rs1146465
Chromosome Location	chr1:95401613-95401614
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95399234..95401768-chr1:95403822..95405346,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1132	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1146460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1146461	0.80[EUR][1000 genomes]
rs12137644	0.81[EUR][1000 genomes]
rs1246351	0.81[EUR][1000 genomes]
rs1265169	0.80[EUR][1000 genomes]
rs1271952	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7518326	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs767015	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95393400-95401800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr1:95393600-95404000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr1:95394000-95415600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr1:95395400-95401800	Weak transcription	Brain Anterior Caudate	brain
5	chr1:95395400-95404000	Weak transcription	Brain Angular Gyrus	brain
6	chr1:95395400-95410400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr1:95395600-95401800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr1:95395600-95401800	Weak transcription	Colon Smooth Muscle	Colon
9	chr1:95395600-95401800	Weak transcription	Lung	lung
10	chr1:95395600-95401800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr1:95395600-95401800	Weak transcription	NHLF	lung
12	chr1:95395600-95402000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr1:95395600-95403400	Weak transcription	Right Atrium	heart
14	chr1:95395600-95403800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:95395600-95403800	Weak transcription	Gastric	stomach
16	chr1:95395600-95403800	Weak transcription	Right Ventricle	heart
17	chr1:95395600-95404200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr1:95395600-95407000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr1:95395600-95412400	Weak transcription	Colonic Mucosa	Colon
20	chr1:95395600-95412400	Weak transcription	Pancreas	Pancrea
21	chr1:95395600-95416400	Weak transcription	Brain Hippocampus Middle	brain
22	chr1:95395800-95401800	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr1:95395800-95408600	Weak transcription	Brain Cingulate Gyrus	brain
24	chr1:95396000-95403200	Weak transcription	Small Intestine	intestine
25	chr1:95396000-95407800	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr1:95396200-95401800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr1:95396200-95401800	Weak transcription	Fetal Lung	lung
28	chr1:95397400-95401800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr1:95398800-95401800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr1:95399200-95404000	Weak transcription	Adipose Nuclei	Adipose
31	chr1:95399400-95401800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr1:95399400-95401800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr1:95399400-95401800	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr1:95399400-95402400	Weak transcription	HepG2	liver
35	chr1:95399400-95402600	Weak transcription	Liver	Liver
36	chr1:95399400-95403800	Weak transcription	Left Ventricle	heart
37	chr1:95399400-95412200	Weak transcription	Stomach Smooth Muscle	stomach
38	chr1:95399400-95412400	Weak transcription	Fetal Stomach	stomach
39	chr1:95399400-95415400	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr1:95399400-95418800	Weak transcription	Ovary	ovary
41	chr1:95400000-95402600	Weak transcription	Duodenum Mucosa	Duodenum
42	chr1:95400200-95401800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr1:95400200-95401800	Weak transcription	HSMM	muscle
44	chr1:95400200-95404000	Enhancers	HUVEC	blood vessel
45	chr1:95400200-95404400	Enhancers	Muscle Satellite Cultured Cells	--
46	chr1:95400400-95401800	Enhancers	HUES48 Cell Line	embryonic stem cell
47	chr1:95400400-95402800	Enhancers	HUES6 Cell Line	embryonic stem cell
48	chr1:95400400-95402800	Weak transcription	Fetal Muscle Trunk	muscle
49	chr1:95400400-95404200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr1:95400400-95405000	Enhancers	Hela-S3	cervix

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