Variant report

Variant	rs12748237
Chromosome Location	chr1:95572013-95572014
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1023330	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10735790	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10782996	0.85[ASN][1000 genomes]
rs10874902	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11165299	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11585462	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11591183	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12563424	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12563592	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12569038	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12569207	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12741128	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12751774	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2391388	0.84[ASN][1000 genomes]
rs2391389	0.84[ASN][1000 genomes]
rs34280926	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35678413	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35888232	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4245670	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4259714	0.82[ASN][1000 genomes]
rs4309032	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4339907	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4344373	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4390223	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4630159	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4949965	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4950056	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4950057	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4950058	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4950077	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4950083	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6675668	0.91[ASN][1000 genomes]
rs6683112	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6687388	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6687450	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7537374	0.83[ASN][1000 genomes]
rs7539139	0.84[ASN][1000 genomes]
rs9437665	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9437672	0.94[ASN][1000 genomes]
rs9437689	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9437810	0.94[ASN][1000 genomes]
rs9437812	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9437813	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9661031	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830636	chr1:95495849-95703126	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95572000-95572600	Enhancers	Rectal Mucosa Donor 31	rectum

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