Variant report

Variant	rs2797616
Chromosome Location	chr1:95429915-95429916
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95428163..95430092-chr1:95432273..95433856,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10493880	0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10735790	0.82[CHB][hapmap];0.80[JPT][hapmap];0.83[AMR][1000 genomes]
rs10874902	0.84[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes]
rs11165299	0.81[AMR][1000 genomes]
rs11585462	0.83[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes]
rs1246349	0.89[ASN][1000 genomes]
rs1265169	0.82[CHB][hapmap]
rs12741128	0.84[CHB][hapmap]
rs2254031	0.96[ASN][1000 genomes]
rs2391388	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs2766005	1.00[ASN][1000 genomes]
rs2766010	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2766011	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2797622	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2797623	0.85[ASN][1000 genomes]
rs35678413	0.81[AMR][1000 genomes]
rs4339907	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs4630159	0.84[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes]
rs4847220	1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes]
rs4949965	0.84[CHB][hapmap];0.91[JPT][hapmap]
rs4950058	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs6675668	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs6683112	0.81[AMR][1000 genomes]
rs6687388	0.84[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes]
rs6687450	1.00[CHB][hapmap];0.80[JPT][hapmap];0.81[YRI][hapmap];0.82[AMR][1000 genomes]
rs6698046	1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7533303	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs7537374	0.92[CHB][hapmap];0.91[JPT][hapmap]
rs7547662	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9437689	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs9437812	0.81[AMR][1000 genomes]
rs9661031	0.83[AMR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95422000-95450800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr1:95428800-95431400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:95428800-95432200	Weak transcription	Pancreas	Pancrea
4	chr1:95428800-95432600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr1:95428800-95436400	Weak transcription	Lung	lung
6	chr1:95428800-95439200	Weak transcription	Aorta	Aorta
7	chr1:95429000-95430000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr1:95429000-95436200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:95429000-95436200	Weak transcription	HSMM	muscle
10	chr1:95429000-95436400	Weak transcription	Fetal Kidney	kidney
11	chr1:95429000-95436400	Weak transcription	HSMMtube	muscle
12	chr1:95429000-95437600	Weak transcription	Right Ventricle	heart
13	chr1:95429000-95439800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr1:95429000-95467600	Weak transcription	Stomach Smooth Muscle	stomach
15	chr1:95429200-95430000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr1:95429200-95432400	Weak transcription	HUVEC	blood vessel
17	chr1:95429200-95436400	Weak transcription	Fetal Muscle Leg	muscle
18	chr1:95429200-95440200	Weak transcription	Fetal Intestine Small	intestine
19	chr1:95429600-95437600	Weak transcription	Fetal Muscle Trunk	muscle
20	chr1:95429800-95432400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr1:95429800-95436200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr1:95429800-95436400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr1:95429800-95436400	Weak transcription	Right Atrium	heart

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