Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11208050	0.80[AMR][1000 genomes]
rs11208052	0.81[ASN][1000 genomes]
rs11208056	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11580642	0.84[ASN][1000 genomes]
rs11803404	0.80[AMR][1000 genomes]
rs11804568	0.85[ASN][1000 genomes]
rs12725996	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12728111	0.84[ASN][1000 genomes]
rs12742537	0.84[ASN][1000 genomes]
rs12749904	0.81[ASN][1000 genomes]
rs12756081	0.81[ASN][1000 genomes]
rs1537496	0.81[ASN][1000 genomes]
rs2780871	0.91[ASN][1000 genomes]
rs2803238	0.90[ASN][1000 genomes]
rs6587997	0.81[ASN][1000 genomes]
rs6587998	0.81[ASN][1000 genomes]
rs6685784	0.81[ASN][1000 genomes]
rs6693530	0.81[ASN][1000 genomes]
rs7512480	0.80[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7515960	0.81[ASN][1000 genomes]
rs7526246	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830015	chr1:63261143-63455296	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:63350600-63357000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:63352800-63354000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr1:63353000-63353800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr1:63353000-63353800	Enhancers	HUES64 Cell Line	embryonic stem cell

Quick Search: