Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR2F2	chr1:63358792-63359121	MCF-7	breast:	n/a	n/a
2	STAT3	chr1:63358795-63358866	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:63356759..63358990-chr1:63365285..63367618,2	K562	blood:

Variant related genes	Relation type
ENSG00000234318	TF binding region

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10493327	0.86[GIH][hapmap]
rs11208032	0.81[CEU][hapmap]
rs11208035	0.86[GIH][hapmap]
rs11208037	0.86[GIH][hapmap]
rs11208038	0.81[CEU][hapmap]
rs11208040	0.84[CEU][hapmap]
rs11208046	0.83[CEU][hapmap]
rs11208056	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11580642	0.80[ASN][1000 genomes]
rs11587081	0.83[CEU][hapmap];0.89[CHB][hapmap]
rs11804568	0.81[ASN][1000 genomes]
rs12564421	0.80[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12728111	0.80[ASN][1000 genomes]
rs12742537	0.80[ASN][1000 genomes]
rs1981067	0.90[CHB][hapmap];0.85[GIH][hapmap]
rs2184192	0.83[YRI][hapmap]
rs2366820	0.81[CEU][hapmap];0.86[GIH][hapmap];0.81[LWK][hapmap];0.80[MEX][hapmap];0.81[MKK][hapmap]
rs2780871	0.94[ASN][1000 genomes]
rs2803238	0.94[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3211074	0.89[CHB][hapmap];0.86[GIH][hapmap]
rs3737893	0.86[GIH][hapmap]
rs4448545	0.81[CEU][hapmap];0.90[CHB][hapmap]
rs6587990	0.86[GIH][hapmap]
rs6686232	0.81[CEU][hapmap];0.83[GIH][hapmap]
rs7513520	0.81[GIH][hapmap]
rs7519205	0.81[CEU][hapmap];0.90[CHB][hapmap];0.86[GIH][hapmap];0.80[MEX][hapmap]
rs7521483	0.90[CHB][hapmap]
rs7526246	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830015	chr1:63261143-63455296	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7512480	ATG4C	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:63356600-63359400	Enhancers	HepG2	liver
2	chr1:63358800-63359600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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