Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10159426	0.80[CEU][hapmap];0.83[CHB][hapmap];0.87[GIH][hapmap]
rs10889383	0.80[CEU][hapmap];0.83[CHB][hapmap];0.87[GIH][hapmap]
rs10889386	0.80[CEU][hapmap]
rs11208047	0.90[CEU][hapmap];0.81[CHB][hapmap]
rs11587081	0.83[CHB][hapmap]
rs12564421	0.90[ASN][1000 genomes]
rs1333733	0.80[CEU][hapmap];0.83[CHB][hapmap];0.87[GIH][hapmap]
rs1360677	0.80[CEU][hapmap]
rs1981067	0.85[CHB][hapmap]
rs2780871	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2886770	0.80[CEU][hapmap]
rs3211074	0.84[CHB][hapmap]
rs4448545	0.85[CHB][hapmap]
rs6679582	0.83[CHB][hapmap];0.87[GIH][hapmap]
rs6683423	0.80[CEU][hapmap];0.83[CHB][hapmap];0.87[GIH][hapmap]
rs6683832	0.80[CEU][hapmap]
rs6687943	0.82[CHB][hapmap]
rs6699457	0.83[CHB][hapmap]
rs7512480	0.94[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7519205	0.85[CHB][hapmap]
rs7521483	0.85[CHB][hapmap]
rs7540030	0.80[CEU][hapmap];0.87[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830015	chr1:63261143-63455296	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2803238	ATG4C	cis	cerebellum	SCAN
rs2803238	ATG4C	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:63358800-63359600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr1:63359400-63362000	Weak transcription	HepG2	liver

Quick Search: