Variant report

Variant	rs12567974
Chromosome Location	chr1:215383799-215383800
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1015244	0.84[AMR][1000 genomes]
rs10157448	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10159003	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10458471	0.97[EUR][1000 genomes]
rs1339408	0.88[AMR][1000 genomes]
rs17024410	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4284239	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61818359	0.88[EUR][1000 genomes]
rs6678565	0.81[AMR][1000 genomes]
rs7526079	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
2	nsv873170	chr1:215367248-215440975	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
3	esv3406576	chr1:215381729-215384477	Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv3341670	chr1:215382154-215384702	Strong transcription Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215375000-215387200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr1:215380400-215384200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:215380600-215408000	Weak transcription	Osteobl	bone
4	chr1:215383600-215384800	Strong transcription	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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