Variant report

Variant	rs12569208
Chromosome Location	chr1:168770313-168770314
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:168769055..168770618-chr1:168773095..168775108,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1008483	0.84[ASN][1000 genomes]
rs10918994	0.82[ASN][1000 genomes]
rs11582358	0.95[ASN][1000 genomes]
rs11583049	0.95[ASN][1000 genomes]
rs12059023	0.84[ASN][1000 genomes]
rs12067471	0.82[ASN][1000 genomes]
rs12564363	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12567397	0.95[ASN][1000 genomes]
rs2066895	0.95[ASN][1000 genomes]
rs3738241	0.95[ASN][1000 genomes]
rs3738242	0.95[ASN][1000 genomes]
rs56032568	0.95[ASN][1000 genomes]
rs59454169	0.98[ASN][1000 genomes]
rs6686124	0.98[ASN][1000 genomes]
rs6699777	0.84[ASN][1000 genomes]
rs72703566	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7544863	0.95[ASN][1000 genomes]
rs926432	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv831847	chr1:168669877-168850129	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168755600-168772800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:168768800-168770800	Enhancers	Fetal Intestine Small	intestine
3	chr1:168769000-168771600	Enhancers	Duodenum Mucosa	Duodenum
4	chr1:168769000-168772000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr1:168769000-168773800	Enhancers	Fetal Intestine Large	intestine
6	chr1:168769200-168772600	Enhancers	HepG2	liver
7	chr1:168769200-168774600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr1:168769400-168770600	Enhancers	Stomach Mucosa	stomach
9	chr1:168769400-168773000	Enhancers	Hela-S3	cervix
10	chr1:168769600-168770400	Enhancers	Gastric	stomach
11	chr1:168769600-168770600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr1:168769600-168770600	Enhancers	Pancreas	Pancrea
13	chr1:168769800-168770400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:168769800-168770400	Enhancers	Small Intestine	intestine
15	chr1:168769800-168770600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr1:168770000-168770400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr1:168770000-168771400	Weak transcription	Fetal Kidney	kidney
18	chr1:168770000-168772400	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr1:168770000-168773400	Weak transcription	A549	lung
20	chr1:168770200-168771000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr1:168770200-168771200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr1:168770200-168771800	Enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links