Variant report

Variant	rs59454169
Chromosome Location	chr1:168745615-168745616
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1008483	0.82[ASN][1000 genomes]
rs10918994	0.80[ASN][1000 genomes]
rs11582358	0.93[ASN][1000 genomes]
rs11583049	0.93[ASN][1000 genomes]
rs12034858	0.81[ASN][1000 genomes]
rs12059023	0.82[ASN][1000 genomes]
rs12067471	0.80[ASN][1000 genomes]
rs12564363	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12567397	0.93[ASN][1000 genomes]
rs12569208	0.98[ASN][1000 genomes]
rs2066895	0.93[ASN][1000 genomes]
rs3738241	0.93[ASN][1000 genomes]
rs3738242	0.93[ASN][1000 genomes]
rs56032568	0.93[ASN][1000 genomes]
rs6686124	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6699777	0.82[ASN][1000 genomes]
rs72703566	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7544863	0.93[ASN][1000 genomes]
rs926432	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv831847	chr1:168669877-168850129	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168743800-168746200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:168745200-168745800	Enhancers	Brain Hippocampus Middle	brain
3	chr1:168745200-168746000	Enhancers	Brain Substantia Nigra	brain
4	chr1:168745600-168745800	Enhancers	Fetal Heart	heart
5	chr1:168745600-168746000	Enhancers	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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