Variant report

Variant	rs56032568
Chromosome Location	chr1:168753787-168753788
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1008483	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10918994	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11582358	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11583049	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12059023	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12067471	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12564363	0.93[ASN][1000 genomes]
rs12567397	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12569208	0.95[ASN][1000 genomes]
rs2066895	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3738241	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3738242	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59454169	0.93[ASN][1000 genomes]
rs6686124	0.93[ASN][1000 genomes]
rs6699777	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72703566	0.93[ASN][1000 genomes]
rs7544863	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs926432	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv831847	chr1:168669877-168850129	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168751600-168754200	Enhancers	Hela-S3	cervix
2	chr1:168752000-168754400	Enhancers	Fetal Lung	lung
3	chr1:168752400-168754000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:168752600-168754200	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr1:168752600-168754600	Enhancers	Adipose Nuclei	Adipose
6	chr1:168752800-168754200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:168752800-168754600	Enhancers	Rectal Smooth Muscle	rectum
8	chr1:168753000-168753800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:168753200-168754600	Enhancers	Fetal Muscle Leg	muscle
10	chr1:168753200-168755000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:168753400-168753800	Weak transcription	Colon Smooth Muscle	Colon
12	chr1:168753400-168756800	Weak transcription	Psoas Muscle	Psoas
13	chr1:168753400-168757200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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