Variant report

Variant	rs12569591
Chromosome Location	chr10:95844301-95844302
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr10:95844238-95844445	PANC-1	pancreas:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:95842549..95845474-chr10:95849262..95851056,2	MCF-7	breast:
2	chr10:95840216..95842414-chr10:95843618..95846583,2	MCF-7	breast:

Variant related genes	Relation type
PLCE1	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17415514	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17415646	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2182093	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95825800-95850400	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr10:95831400-95864200	Weak transcription	Colonic Mucosa	Colon
3	chr10:95836600-95861400	Weak transcription	Pancreas	Pancrea
4	chr10:95836600-95863400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:95837200-95847200	Weak transcription	Fetal Intestine Small	intestine
6	chr10:95837600-95876000	Weak transcription	Fetal Intestine Large	intestine
7	chr10:95841600-95845200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr10:95841800-95844800	Weak transcription	A549	lung
9	chr10:95843000-95845200	Weak transcription	Fetal Brain Female	brain
10	chr10:95843200-95844400	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr10:95843200-95844400	Enhancers	Liver	Liver
12	chr10:95843200-95844400	Enhancers	Small Intestine	intestine
13	chr10:95843200-95846200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr10:95843200-95846400	Enhancers	Fetal Muscle Leg	muscle
15	chr10:95843400-95845200	Weak transcription	Right Atrium	heart
16	chr10:95843400-95846400	Enhancers	Fetal Stomach	stomach
17	chr10:95843400-95848800	Weak transcription	Left Ventricle	heart
18	chr10:95843400-95849600	Weak transcription	Duodenum Mucosa	Duodenum
19	chr10:95843400-95864000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr10:95843600-95845600	Enhancers	Stomach Smooth Muscle	stomach
21	chr10:95843800-95845200	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr10:95844000-95848200	Weak transcription	Adipose Nuclei	Adipose
23	chr10:95844000-95848200	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr10:95844200-95844400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr10:95844200-95844400	Enhancers	Psoas Muscle	Psoas
26	chr10:95844200-95846000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr10:95844200-95847600	Weak transcription	Fetal Lung	lung

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