Variant report

Variant	rs17415514
Chromosome Location	chr10:95804582-95804583
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10882379	1.00[LWK][hapmap];0.85[MKK][hapmap]
rs11187789	1.00[LWK][hapmap]
rs12569591	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17415646	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17506505	1.00[LWK][hapmap]
rs2182093	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95790000-95813200	Weak transcription	Fetal Stomach	stomach
2	chr10:95790600-95812000	Weak transcription	Ovary	ovary
3	chr10:95792000-95806000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr10:95792000-95813200	Weak transcription	Aorta	Aorta
5	chr10:95796200-95805800	Weak transcription	Pancreas	Pancrea
6	chr10:95797600-95806000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr10:95799800-95805600	Strong transcription	Cortex derived primary cultured neurospheres	brain
8	chr10:95801600-95806000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:95802200-95809800	Weak transcription	Psoas Muscle	Psoas
10	chr10:95802400-95805200	Weak transcription	Duodenum Mucosa	Duodenum
11	chr10:95802400-95812600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:95803000-95806000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr10:95803200-95804600	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr10:95803200-95809000	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr10:95803400-95804600	Genic enhancers	A549	lung
16	chr10:95803400-95806000	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr10:95803400-95819800	Weak transcription	Fetal Intestine Large	intestine
18	chr10:95803600-95805800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr10:95803600-95815400	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr10:95804000-95804600	Strong transcription	Fetal Muscle Leg	muscle
21	chr10:95804000-95809400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr10:95804000-95812600	Weak transcription	Osteobl	bone
23	chr10:95804400-95804600	Enhancers	Colonic Mucosa	Colon
24	chr10:95804400-95806400	Strong transcription	Fetal Intestine Small	intestine
25	chr10:95804400-95812800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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