Variant report

Variant	rs11187789
Chromosome Location	chr10:95871655-95871656
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr10:95871474-95871717	MCF-7	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000232913	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10882379	1.00[LWK][hapmap]
rs10882396	0.87[GIH][hapmap]
rs11187792	0.83[GIH][hapmap];0.84[TSI][hapmap]
rs17415514	1.00[LWK][hapmap]
rs17415646	1.00[LWK][hapmap]
rs17416616	0.88[GIH][hapmap]
rs17506505	1.00[LWK][hapmap]
rs1998709	0.87[GIH][hapmap]
rs2182093	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11187789	NUDT9P1	cis	cerebellum	SCAN

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95837600-95876000	Weak transcription	Fetal Intestine Large	intestine
2	chr10:95857800-95875600	Weak transcription	Gastric	stomach
3	chr10:95858800-95892400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr10:95862600-95881600	Weak transcription	Psoas Muscle	Psoas
5	chr10:95864200-95878400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr10:95864200-95891200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr10:95864400-95877000	Weak transcription	Fetal Intestine Small	intestine
8	chr10:95865200-95873600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr10:95867200-95876800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:95867600-95882200	Weak transcription	Fetal Stomach	stomach
11	chr10:95868600-95873400	Weak transcription	HSMMtube	muscle
12	chr10:95868600-95875600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:95870600-95872800	Enhancers	Osteobl	bone
14	chr10:95870600-95873400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr10:95871200-95872400	Weak transcription	A549	lung
16	chr10:95871200-95873200	Weak transcription	Stomach Smooth Muscle	stomach
17	chr10:95871200-95883800	Weak transcription	Spleen	Spleen
18	chr10:95871400-95871800	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr10:95871400-95871800	Enhancers	Rectal Smooth Muscle	rectum
20	chr10:95871400-95873800	Weak transcription	Left Ventricle	heart
21	chr10:95871400-95875600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr10:95871400-95875600	Weak transcription	Aorta	Aorta
23	chr10:95871400-95876800	Weak transcription	Fetal Muscle Leg	muscle
24	chr10:95871400-95876800	Weak transcription	Right Atrium	heart
25	chr10:95871400-95882000	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr10:95871400-95882200	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr10:95871600-95871800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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