Variant report

Variant	rs1998709
Chromosome Location	chr10:95884574-95884575
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:95801073..95803137-chr10:95883446..95885474,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10882395	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882396	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187789	0.87[GIH][hapmap]
rs11187792	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17416616	0.84[GIH][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs2689690	0.81[EUR][1000 genomes]
rs932763	0.84[CEU][hapmap];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95858800-95892400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr10:95864200-95891200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr10:95875800-95905600	Weak transcription	Gastric	stomach
4	chr10:95881400-95886400	Enhancers	NHDF-Ad	bronchial
5	chr10:95881400-95886400	Enhancers	NHLF	lung
6	chr10:95881600-95886400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:95881600-95886400	Enhancers	Osteobl	bone
8	chr10:95881600-95886600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:95881600-95891200	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr10:95881800-95885600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr10:95881800-95886600	Enhancers	Muscle Satellite Cultured Cells	--
12	chr10:95882000-95884600	Weak transcription	Brain Angular Gyrus	brain
13	chr10:95882000-95886600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:95882000-95891600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr10:95882000-95893000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr10:95882200-95884600	Flanking Active TSS	A549	lung
17	chr10:95882200-95884600	Enhancers	HepG2	liver
18	chr10:95882200-95885800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr10:95882800-95886200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr10:95883200-95897600	Weak transcription	Colonic Mucosa	Colon
21	chr10:95883200-95902400	Weak transcription	Ovary	ovary
22	chr10:95883400-95890800	Weak transcription	Colon Smooth Muscle	Colon
23	chr10:95883400-95893400	Weak transcription	Brain Substantia Nigra	brain
24	chr10:95883600-95885400	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr10:95883600-95888800	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr10:95883600-95889200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr10:95883800-95884800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr10:95883800-95885000	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr10:95883800-95885000	Weak transcription	NH-A	brain
30	chr10:95883800-95885400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr10:95883800-95888800	Weak transcription	Stomach Smooth Muscle	stomach
32	chr10:95883800-95889200	Weak transcription	Fetal Stomach	stomach
33	chr10:95883800-95890800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr10:95883800-95891200	Weak transcription	Fetal Lung	lung
35	chr10:95883800-95891400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr10:95883800-95891600	Weak transcription	NHEK	skin
37	chr10:95884000-95884800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr10:95884000-95885000	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr10:95884000-95885400	Weak transcription	HSMM	muscle
40	chr10:95884000-95885600	Weak transcription	Aorta	Aorta
41	chr10:95884000-95885600	Weak transcription	Rectal Smooth Muscle	rectum
42	chr10:95884000-95888800	Weak transcription	Fetal Muscle Leg	muscle
43	chr10:95884000-95888800	Weak transcription	Right Atrium	heart
44	chr10:95884000-95890600	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr10:95884000-95892000	Weak transcription	Fetal Intestine Small	intestine
46	chr10:95884000-95893000	Weak transcription	Fetal Intestine Large	intestine
47	chr10:95884000-95893000	Weak transcription	Left Ventricle	heart
48	chr10:95884200-95885200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr10:95884200-95885600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr10:95884200-95892000	Weak transcription	Sigmoid Colon	Sigmoid Colon

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