Variant report

Variant	rs17416616
Chromosome Location	chr10:95874185-95874186
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:95873437..95875575-chr10:95878485..95881455,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10882395	0.84[EUR][1000 genomes]
rs10882396	0.84[GIH][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs11187789	0.88[GIH][hapmap]
rs11187792	0.80[GIH][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes]
rs1998709	0.84[GIH][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95837600-95876000	Weak transcription	Fetal Intestine Large	intestine
2	chr10:95857800-95875600	Weak transcription	Gastric	stomach
3	chr10:95858800-95892400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr10:95862600-95881600	Weak transcription	Psoas Muscle	Psoas
5	chr10:95864200-95878400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr10:95864200-95891200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr10:95864400-95877000	Weak transcription	Fetal Intestine Small	intestine
8	chr10:95867200-95876800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:95867600-95882200	Weak transcription	Fetal Stomach	stomach
10	chr10:95868600-95875600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:95871200-95883800	Weak transcription	Spleen	Spleen
12	chr10:95871400-95875600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr10:95871400-95875600	Weak transcription	Aorta	Aorta
14	chr10:95871400-95876800	Weak transcription	Fetal Muscle Leg	muscle
15	chr10:95871400-95876800	Weak transcription	Right Atrium	heart
16	chr10:95871400-95882000	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr10:95871400-95882200	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr10:95872600-95875600	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr10:95872800-95875600	Weak transcription	Osteobl	bone
20	chr10:95873000-95874400	Enhancers	A549	lung
21	chr10:95873400-95874200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr10:95873400-95875600	Weak transcription	Stomach Smooth Muscle	stomach
23	chr10:95873600-95874400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr10:95874000-95874200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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