Variant report

Variant	rs10882395
Chromosome Location	chr10:95883943-95883944
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:95801073..95803137-chr10:95883446..95885474,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10882396	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11187792	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17416616	0.84[EUR][1000 genomes]
rs1998709	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2689690	0.82[EUR][1000 genomes]
rs932763	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95858800-95892400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr10:95864200-95891200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr10:95875800-95905600	Weak transcription	Gastric	stomach
4	chr10:95880800-95884000	Enhancers	Fetal Muscle Leg	muscle
5	chr10:95881000-95884200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:95881200-95884000	Enhancers	Aorta	Aorta
7	chr10:95881400-95884000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr10:95881400-95884000	Enhancers	Right Atrium	heart
9	chr10:95881400-95886400	Enhancers	NHDF-Ad	bronchial
10	chr10:95881400-95886400	Enhancers	NHLF	lung
11	chr10:95881600-95886400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:95881600-95886400	Enhancers	Osteobl	bone
13	chr10:95881600-95886600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:95881600-95891200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr10:95881800-95884000	Enhancers	Left Ventricle	heart
16	chr10:95881800-95885600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr10:95881800-95886600	Enhancers	Muscle Satellite Cultured Cells	--
18	chr10:95882000-95884000	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr10:95882000-95884600	Weak transcription	Brain Angular Gyrus	brain
20	chr10:95882000-95886600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr10:95882000-95891600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr10:95882000-95893000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr10:95882200-95884000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr10:95882200-95884200	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr10:95882200-95884600	Flanking Active TSS	A549	lung
26	chr10:95882200-95884600	Enhancers	HepG2	liver
27	chr10:95882200-95885800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr10:95882400-95884000	Enhancers	HSMM	muscle
29	chr10:95882400-95884400	Enhancers	HSMMtube	muscle
30	chr10:95882600-95884000	Enhancers	Fetal Intestine Small	intestine
31	chr10:95882600-95884000	Enhancers	Rectal Smooth Muscle	rectum
32	chr10:95882600-95884200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr10:95882800-95884000	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr10:95882800-95886200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr10:95883000-95884000	Enhancers	Fetal Intestine Large	intestine
36	chr10:95883000-95884400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr10:95883200-95884000	Enhancers	Rectal Mucosa Donor 31	rectum
38	chr10:95883200-95884400	Enhancers	Small Intestine	intestine
39	chr10:95883200-95884400	Enhancers	Stomach Mucosa	stomach
40	chr10:95883200-95897600	Weak transcription	Colonic Mucosa	Colon
41	chr10:95883200-95902400	Weak transcription	Ovary	ovary
42	chr10:95883400-95890800	Weak transcription	Colon Smooth Muscle	Colon
43	chr10:95883400-95893400	Weak transcription	Brain Substantia Nigra	brain
44	chr10:95883600-95885400	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr10:95883600-95888800	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr10:95883600-95889200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr10:95883800-95884000	Enhancers	Spleen	Spleen
48	chr10:95883800-95884800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr10:95883800-95885000	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr10:95883800-95885000	Weak transcription	NH-A	brain

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