Variant report

Variant	rs932763
Chromosome Location	chr10:95895728-95895729
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10882395	0.81[EUR][1000 genomes]
rs10882396	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs11187792	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs1223628	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1223634	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1998709	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs2689690	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95875800-95905600	Weak transcription	Gastric	stomach
2	chr10:95883200-95897600	Weak transcription	Colonic Mucosa	Colon
3	chr10:95883200-95902400	Weak transcription	Ovary	ovary
4	chr10:95891200-95898400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:95891600-95896400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr10:95891800-95901000	Weak transcription	Fetal Kidney	kidney
7	chr10:95892200-95897800	Weak transcription	NHDF-Ad	bronchial
8	chr10:95892200-95898200	Weak transcription	Fetal Lung	lung
9	chr10:95892200-95905200	Weak transcription	Stomach Mucosa	stomach
10	chr10:95892400-95897200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:95893400-95895800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:95893400-95896200	Weak transcription	Aorta	Aorta
13	chr10:95893400-95896400	Weak transcription	Fetal Stomach	stomach
14	chr10:95893400-95897400	Weak transcription	NHLF	lung
15	chr10:95893400-95897400	Weak transcription	Osteobl	bone
16	chr10:95893400-95897600	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr10:95893400-95898200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr10:95893400-95901600	Weak transcription	Fetal Brain Male	brain
19	chr10:95893600-95897600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:95893600-95897600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr10:95893600-95897800	Weak transcription	Duodenum Mucosa	Duodenum
22	chr10:95893600-95897800	Weak transcription	Spleen	Spleen
23	chr10:95893600-95904400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr10:95893800-95897600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr10:95893800-95897600	Weak transcription	HSMMtube	muscle
26	chr10:95893800-95897800	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr10:95893800-95897800	Weak transcription	Right Atrium	heart
28	chr10:95893800-95897800	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr10:95893800-95897800	Weak transcription	HSMM	muscle
30	chr10:95893800-95899400	Weak transcription	Left Ventricle	heart
31	chr10:95893800-95902400	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr10:95893800-95902400	Weak transcription	Pancreas	Pancrea
33	chr10:95893800-95902600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr10:95893800-95906000	Weak transcription	Stomach Smooth Muscle	stomach
35	chr10:95894000-95897600	Weak transcription	Fetal Muscle Leg	muscle
36	chr10:95894400-95905400	Weak transcription	A549	lung
37	chr10:95894600-95897800	Weak transcription	Fetal Intestine Small	intestine
38	chr10:95894600-95898000	Weak transcription	Fetal Intestine Large	intestine
39	chr10:95894600-95908400	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr10:95894800-95897400	Weak transcription	Fetal Muscle Trunk	muscle

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