Variant report

Variant	rs1223634
Chromosome Location	chr10:95903455-95903456
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1108456	0.94[ASN][1000 genomes]
rs1223628	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1475300	0.97[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1749322	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1776945	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2689690	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2689694	0.94[ASN][1000 genomes]
rs2689697	0.94[ASN][1000 genomes]
rs932763	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95875800-95905600	Weak transcription	Gastric	stomach
2	chr10:95892200-95905200	Weak transcription	Stomach Mucosa	stomach
3	chr10:95893600-95904400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr10:95893800-95906000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr10:95894400-95905400	Weak transcription	A549	lung
6	chr10:95894600-95908400	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr10:95898200-95908000	Weak transcription	Right Atrium	heart
8	chr10:95898400-95903600	Weak transcription	Fetal Lung	lung
9	chr10:95898400-95904200	Weak transcription	Aorta	Aorta
10	chr10:95898400-95910400	Weak transcription	Colonic Mucosa	Colon
11	chr10:95898600-95905400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr10:95898800-95903600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:95898800-95904200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr10:95898800-95905400	Weak transcription	Fetal Stomach	stomach
15	chr10:95898800-95905600	Weak transcription	Fetal Intestine Large	intestine
16	chr10:95898800-95908400	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr10:95900400-95904400	Weak transcription	Fetal Intestine Small	intestine
18	chr10:95900800-95904000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:95902600-95903800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr10:95902600-95906200	Weak transcription	Pancreas	Pancrea
21	chr10:95902800-95904400	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr10:95902800-95904600	Weak transcription	Fetal Muscle Leg	muscle

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