Variant report

Variant	rs2689694
Chromosome Location	chr10:95937944-95937945
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:95929132..95931767-chr10:95936517..95938753,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1108456	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1223628	0.94[ASN][1000 genomes]
rs1223634	0.94[ASN][1000 genomes]
rs1475300	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1749322	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1776945	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2689697	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2689704	0.82[CHB][hapmap]
rs2689707	0.82[CHB][hapmap]
rs2798001	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95924800-95947200	Weak transcription	Aorta	Aorta
2	chr10:95925800-95938000	Weak transcription	A549	lung
3	chr10:95929000-95954200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:95929200-95966800	Weak transcription	Pancreas	Pancrea
5	chr10:95931600-95938200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr10:95931600-95953000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr10:95931800-95952600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr10:95932000-95940600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr10:95932000-95944200	Weak transcription	Duodenum Mucosa	Duodenum
10	chr10:95932000-95948800	Weak transcription	Gastric	stomach
11	chr10:95932000-95953000	Weak transcription	Colonic Mucosa	Colon
12	chr10:95932400-95938000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:95932400-95939000	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr10:95932600-95968000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr10:95932800-95940600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr10:95932800-95954200	Weak transcription	Fetal Brain Female	brain
17	chr10:95933000-95953000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr10:95933000-95954200	Weak transcription	Right Atrium	heart
19	chr10:95933000-95972600	Weak transcription	Fetal Intestine Large	intestine
20	chr10:95935200-95942400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr10:95936200-95943200	Weak transcription	Fetal Intestine Small	intestine
22	chr10:95936600-95939000	Enhancers	Fetal Stomach	stomach
23	chr10:95936600-95939200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr10:95936800-95942600	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr10:95937400-95940600	Enhancers	Fetal Lung	lung
26	chr10:95937600-95939200	Enhancers	Ovary	ovary
27	chr10:95937800-95939600	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links