Variant report

Variant	rs2689707
Chromosome Location	chr10:95959620-95959621
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1108456	0.82[CHB][hapmap]
rs1475300	0.82[CHB][hapmap]
rs2689689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2689694	0.82[CHB][hapmap]
rs2689702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2689704	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2798001	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2949004	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95929200-95966800	Weak transcription	Pancreas	Pancrea
2	chr10:95932600-95968000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr10:95933000-95972600	Weak transcription	Fetal Intestine Large	intestine
4	chr10:95941200-95979800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:95943400-95973800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:95944200-95959800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr10:95953200-95960400	Weak transcription	Small Intestine	intestine
8	chr10:95953600-95965600	Weak transcription	Fetal Kidney	kidney
9	chr10:95953800-95965000	Weak transcription	Fetal Muscle Leg	muscle
10	chr10:95954200-95961600	Weak transcription	Fetal Lung	lung
11	chr10:95955200-95965400	Weak transcription	Aorta	Aorta
12	chr10:95956200-95965200	Weak transcription	Colon Smooth Muscle	Colon
13	chr10:95956400-95962000	Weak transcription	Fetal Stomach	stomach
14	chr10:95957200-95965200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:95958200-95959800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr10:95958400-95959800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
17	chr10:95958400-95959800	ZNF genes & repeats	A549	lung
18	chr10:95958800-95959800	Enhancers	Muscle Satellite Cultured Cells	--
19	chr10:95959000-95960200	Enhancers	Osteobl	bone
20	chr10:95959400-95959800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr10:95959600-95960000	Enhancers	Duodenum Mucosa	Duodenum
22	chr10:95959600-95972400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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