Variant report

Variant	rs2689704
Chromosome Location	chr10:95960988-95960989
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1108456	0.82[CHB][hapmap]
rs2689689	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2689694	0.82[CHB][hapmap]
rs2689702	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2689707	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2798001	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2949004	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95929200-95966800	Weak transcription	Pancreas	Pancrea
2	chr10:95932600-95968000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr10:95933000-95972600	Weak transcription	Fetal Intestine Large	intestine
4	chr10:95941200-95979800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:95943400-95973800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:95953600-95965600	Weak transcription	Fetal Kidney	kidney
7	chr10:95953800-95965000	Weak transcription	Fetal Muscle Leg	muscle
8	chr10:95954200-95961600	Weak transcription	Fetal Lung	lung
9	chr10:95955200-95965400	Weak transcription	Aorta	Aorta
10	chr10:95956200-95965200	Weak transcription	Colon Smooth Muscle	Colon
11	chr10:95956400-95962000	Weak transcription	Fetal Stomach	stomach
12	chr10:95957200-95965200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:95959600-95972400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:95959800-95961800	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr10:95959800-95965000	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr10:95959800-95970600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr10:95959800-95972800	Weak transcription	A549	lung
18	chr10:95960000-95991800	Weak transcription	Duodenum Mucosa	Duodenum
19	chr10:95960200-95965200	Weak transcription	Osteobl	bone
20	chr10:95960200-95965800	Weak transcription	Fetal Intestine Small	intestine
21	chr10:95960400-95961200	Enhancers	Small Intestine	intestine
22	chr10:95960600-95970200	Weak transcription	Fetal Muscle Trunk	muscle
23	chr10:95960800-95970800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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