Variant report

Variant	rs2689689
Chromosome Location	chr10:95955996-95955997
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:95949567..95952050-chr10:95954535..95957400,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2689702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2689704	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2689707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2798001	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2949004	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95929200-95966800	Weak transcription	Pancreas	Pancrea
2	chr10:95932600-95968000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr10:95933000-95972600	Weak transcription	Fetal Intestine Large	intestine
4	chr10:95941200-95979800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:95943400-95973800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:95944200-95959800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr10:95952600-95956000	Enhancers	Rectal Smooth Muscle	rectum
8	chr10:95952800-95956400	Enhancers	Fetal Stomach	stomach
9	chr10:95953200-95960400	Weak transcription	Small Intestine	intestine
10	chr10:95953600-95965600	Weak transcription	Fetal Kidney	kidney
11	chr10:95953800-95965000	Weak transcription	Fetal Muscle Leg	muscle
12	chr10:95954200-95961600	Weak transcription	Fetal Lung	lung
13	chr10:95954400-95958600	Weak transcription	Fetal Intestine Small	intestine
14	chr10:95954400-95959000	Weak transcription	NH-A	brain
15	chr10:95954400-95959600	Weak transcription	Duodenum Mucosa	Duodenum
16	chr10:95954600-95958200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr10:95954600-95958400	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr10:95954600-95958400	Weak transcription	A549	lung
19	chr10:95954800-95958800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr10:95954800-95959000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr10:95954800-95959000	Weak transcription	Osteobl	bone
22	chr10:95955200-95965400	Weak transcription	Aorta	Aorta
23	chr10:95955600-95956000	Enhancers	Stomach Smooth Muscle	stomach
24	chr10:95955600-95956200	Enhancers	Colon Smooth Muscle	Colon
25	chr10:95955600-95956600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr10:95955600-95959000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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