Variant report

Variant	rs1223628
Chromosome Location	chr10:95907072-95907073
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1108456	0.94[ASN][1000 genomes]
rs1223634	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1475300	0.97[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1749322	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1776945	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2689690	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2689694	0.94[ASN][1000 genomes]
rs2689697	0.94[ASN][1000 genomes]
rs932763	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95894600-95908400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr10:95898200-95908000	Weak transcription	Right Atrium	heart
3	chr10:95898400-95910400	Weak transcription	Colonic Mucosa	Colon
4	chr10:95898800-95908400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr10:95904800-95907600	Enhancers	Aorta	Aorta
6	chr10:95904800-95912800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr10:95906000-95924800	Weak transcription	A549	lung
8	chr10:95906200-95908000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:95906200-95910600	Weak transcription	Fetal Muscle Trunk	muscle
10	chr10:95906400-95908000	Weak transcription	Pancreas	Pancrea
11	chr10:95906400-95909000	Weak transcription	Fetal Muscle Leg	muscle
12	chr10:95906400-95914600	Weak transcription	Fetal Intestine Small	intestine
13	chr10:95906400-95930800	Weak transcription	Fetal Stomach	stomach
14	chr10:95906800-95930800	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr10:95906800-95931200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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