Variant report

Variant	rs2689690
Chromosome Location	chr10:95899706-95899707
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10882395	0.82[EUR][1000 genomes]
rs10882396	0.82[EUR][1000 genomes]
rs11187792	0.84[EUR][1000 genomes]
rs1223628	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1223634	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1998709	0.81[EUR][1000 genomes]
rs932763	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95875800-95905600	Weak transcription	Gastric	stomach
2	chr10:95883200-95902400	Weak transcription	Ovary	ovary
3	chr10:95891800-95901000	Weak transcription	Fetal Kidney	kidney
4	chr10:95892200-95905200	Weak transcription	Stomach Mucosa	stomach
5	chr10:95893400-95901600	Weak transcription	Fetal Brain Male	brain
6	chr10:95893600-95904400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr10:95893800-95902400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr10:95893800-95902400	Weak transcription	Pancreas	Pancrea
9	chr10:95893800-95902600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr10:95893800-95906000	Weak transcription	Stomach Smooth Muscle	stomach
11	chr10:95894400-95905400	Weak transcription	A549	lung
12	chr10:95894600-95908400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr10:95897800-95900400	Strong transcription	Fetal Intestine Small	intestine
14	chr10:95898200-95908000	Weak transcription	Right Atrium	heart
15	chr10:95898400-95900200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr10:95898400-95903600	Weak transcription	Fetal Lung	lung
17	chr10:95898400-95904200	Weak transcription	Aorta	Aorta
18	chr10:95898400-95910400	Weak transcription	Colonic Mucosa	Colon
19	chr10:95898600-95900400	Weak transcription	Duodenum Mucosa	Duodenum
20	chr10:95898600-95905400	Weak transcription	Fetal Muscle Trunk	muscle
21	chr10:95898800-95902400	Weak transcription	Fetal Muscle Leg	muscle
22	chr10:95898800-95903600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr10:95898800-95904200	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr10:95898800-95905400	Weak transcription	Fetal Stomach	stomach
25	chr10:95898800-95905600	Weak transcription	Fetal Intestine Large	intestine
26	chr10:95898800-95908400	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr10:95899600-95899800	Enhancers	Skeletal Muscle Female	skeletal muscle

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