Variant report

Variant	rs2689697
Chromosome Location	chr10:95944208-95944209
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1108456	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1223628	0.94[ASN][1000 genomes]
rs1223634	0.94[ASN][1000 genomes]
rs1475300	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1749322	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1776945	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2689694	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95924800-95947200	Weak transcription	Aorta	Aorta
2	chr10:95929000-95954200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:95929200-95966800	Weak transcription	Pancreas	Pancrea
4	chr10:95931600-95953000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr10:95931800-95952600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr10:95932000-95948800	Weak transcription	Gastric	stomach
7	chr10:95932000-95953000	Weak transcription	Colonic Mucosa	Colon
8	chr10:95932600-95968000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr10:95932800-95954200	Weak transcription	Fetal Brain Female	brain
10	chr10:95933000-95953000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr10:95933000-95954200	Weak transcription	Right Atrium	heart
12	chr10:95933000-95972600	Weak transcription	Fetal Intestine Large	intestine
13	chr10:95939200-95952800	Weak transcription	Ovary	ovary
14	chr10:95939400-95945000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr10:95940600-95952800	Weak transcription	Fetal Lung	lung
16	chr10:95941200-95979800	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr10:95941600-95947200	Weak transcription	Fetal Stomach	stomach
18	chr10:95942400-95945000	Enhancers	Muscle Satellite Cultured Cells	--
19	chr10:95942600-95944400	Strong transcription	Fetal Muscle Leg	muscle
20	chr10:95942600-95944600	Enhancers	Osteobl	bone
21	chr10:95942600-95945000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:95942800-95945000	Enhancers	NHLF	lung
23	chr10:95943200-95944600	Strong transcription	Fetal Intestine Small	intestine
24	chr10:95943400-95973800	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr10:95943800-95946200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr10:95943800-95952800	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr10:95944000-95952600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr10:95944000-95952600	Weak transcription	A549	lung
29	chr10:95944000-95952600	Weak transcription	NH-A	brain
30	chr10:95944200-95959800	Weak transcription	Fetal Muscle Trunk	muscle

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