Variant report

Variant	rs2182093
Chromosome Location	chr10:95787977-95787978
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10882379	1.00[LWK][hapmap];0.85[MKK][hapmap]
rs11187789	1.00[LWK][hapmap]
rs12569591	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17415514	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17415646	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17506505	1.00[LWK][hapmap]
rs3814689	0.85[MEX][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2182093	PLCE1	cis	parietal	SCAN
rs2182093	ALDH18A1	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95767800-95789800	Weak transcription	Pancreas	Pancrea
2	chr10:95770000-95800800	Weak transcription	Colonic Mucosa	Colon
3	chr10:95786800-95788200	Enhancers	Stomach Mucosa	stomach
4	chr10:95787000-95788800	ZNF genes & repeats	Fetal Muscle Leg	muscle
5	chr10:95787400-95789200	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr10:95787800-95791200	ZNF genes & repeats	A549	lung
7	chr10:95787800-95792400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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