Variant report

Variant	rs12571272
Chromosome Location	chr10:27508861-27508862
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27499142..27501417-chr10:27507244..27509813,2	MCF-7	breast:
2	chr10:27508030..27510726-chr10:27511463..27512978,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11015619	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11015620	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12411593	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12411672	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12415447	0.92[AMR][1000 genomes]
rs12570662	0.82[ASN][1000 genomes]
rs12572325	0.84[ASN][1000 genomes]
rs16916444	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs3818969	0.94[ASN][1000 genomes]
rs4747590	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4747592	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs4747594	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56352097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61149145	0.88[AMR][1000 genomes]
rs73598046	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73598048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918793	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs7919198	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422253	chr10:27431366-27575370	Strong transcription Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3337781	chr10:27472216-27666703	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv894980	chr10:27477285-27526531	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv8614	chr10:27504487-27828406	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27473200-27524200	Weak transcription	Stomach Mucosa	stomach
2	chr10:27474200-27512000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr10:27475600-27528600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr10:27476200-27528600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr10:27481600-27527800	Weak transcription	Psoas Muscle	Psoas
6	chr10:27482600-27512600	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr10:27483800-27512200	Strong transcription	Liver	Liver
8	chr10:27484000-27512400	Strong transcription	Primary B cells from peripheral blood	blood
9	chr10:27484000-27512400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr10:27484000-27512400	Strong transcription	Rectal Mucosa Donor 29	rectum
11	chr10:27484000-27512600	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr10:27484200-27512400	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr10:27484600-27512400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr10:27484800-27510800	Strong transcription	Left Ventricle	heart
15	chr10:27484800-27512400	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr10:27484800-27513000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr10:27484800-27513200	Strong transcription	Fetal Intestine Large	intestine
18	chr10:27485000-27512400	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr10:27485200-27512200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr10:27485200-27512400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:27485200-27512400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr10:27485200-27512600	Strong transcription	Duodenum Mucosa	Duodenum
23	chr10:27486600-27512200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr10:27487200-27512400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr10:27488400-27512400	Strong transcription	Duodenum Smooth Muscle	Duodenum
26	chr10:27488600-27528600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr10:27489600-27512400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr10:27489800-27512200	Strong transcription	Adipose Nuclei	Adipose
29	chr10:27489800-27512400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr10:27489800-27512400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr10:27490000-27512400	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr10:27490000-27512400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr10:27490000-27512600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr10:27490200-27512000	Strong transcription	Skeletal Muscle Female	skeletal muscle
35	chr10:27490600-27509000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr10:27491200-27512400	Strong transcription	Placenta	Placenta
37	chr10:27491400-27512600	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr10:27491800-27527800	Weak transcription	Fetal Brain Male	brain
39	chr10:27492800-27512400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr10:27493600-27509000	Weak transcription	Hela-S3	cervix
41	chr10:27494800-27528200	Weak transcription	K562	blood
42	chr10:27497000-27509400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr10:27497200-27510600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr10:27499400-27512400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr10:27500000-27509600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr10:27500000-27528000	Weak transcription	NHLF	lung
47	chr10:27500000-27528400	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr10:27500200-27519800	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr10:27500800-27528000	Weak transcription	HMEC	breast
50	chr10:27501000-27528000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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