Variant report

Variant	rs73598046
Chromosome Location	chr10:27492817-27492818
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27486222..27488515-chr10:27491807..27494429,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11015619	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11015620	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12411593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12411672	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12415447	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12570662	0.84[ASN][1000 genomes]
rs12571272	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12572325	0.82[ASN][1000 genomes]
rs16916444	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16927573	0.80[AMR][1000 genomes]
rs3818969	0.91[ASN][1000 genomes]
rs4747590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4747592	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4747594	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs56352097	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61149145	0.88[AMR][1000 genomes]
rs73598048	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7900533	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7918793	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7919198	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422253	chr10:27431366-27575370	Strong transcription Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3337781	chr10:27472216-27666703	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv894980	chr10:27477285-27526531	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27446400-27499200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:27446400-27508400	Weak transcription	Small Intestine	intestine
3	chr10:27455000-27494600	Weak transcription	Aorta	Aorta
4	chr10:27455000-27495200	Weak transcription	Right Ventricle	heart
5	chr10:27455600-27494600	Weak transcription	Pancreas	Pancrea
6	chr10:27456200-27496800	Weak transcription	Esophagus	oesophagus
7	chr10:27473200-27524200	Weak transcription	Stomach Mucosa	stomach
8	chr10:27474200-27494400	Weak transcription	NHEK	skin
9	chr10:27474200-27512000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr10:27475600-27528600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr10:27476200-27493000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr10:27476200-27528600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:27476400-27499000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr10:27476600-27494600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr10:27477000-27496400	Weak transcription	HSMM	muscle
16	chr10:27478000-27493000	Weak transcription	K562	blood
17	chr10:27481600-27527800	Weak transcription	Psoas Muscle	Psoas
18	chr10:27481800-27498000	Weak transcription	NHLF	lung
19	chr10:27481800-27499200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr10:27482600-27512600	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr10:27483800-27512200	Strong transcription	Liver	Liver
22	chr10:27484000-27512400	Strong transcription	Primary B cells from peripheral blood	blood
23	chr10:27484000-27512400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr10:27484000-27512400	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr10:27484000-27512600	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr10:27484200-27512400	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr10:27484600-27512400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr10:27484800-27510800	Strong transcription	Left Ventricle	heart
29	chr10:27484800-27512400	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr10:27484800-27513000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr10:27484800-27513200	Strong transcription	Fetal Intestine Large	intestine
32	chr10:27485000-27512400	Strong transcription	Primary neutrophils fromperipheralblood	blood
33	chr10:27485200-27512200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr10:27485200-27512400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr10:27485200-27512400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr10:27485200-27512600	Strong transcription	Duodenum Mucosa	Duodenum
37	chr10:27485800-27505800	Strong transcription	Fetal Muscle Leg	muscle
38	chr10:27486200-27494200	Weak transcription	Fetal Brain Female	brain
39	chr10:27486600-27493800	Strong transcription	Cortex derived primary cultured neurospheres	brain
40	chr10:27486600-27499000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr10:27486600-27508800	Strong transcription	Fetal Intestine Small	intestine
42	chr10:27486600-27508800	Strong transcription	Fetal Stomach	stomach
43	chr10:27486600-27512200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr10:27487200-27512400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr10:27487600-27493200	Strong transcription	Lung	lung
46	chr10:27487800-27498400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr10:27488000-27508800	Strong transcription	Fetal Muscle Trunk	muscle
48	chr10:27488400-27497400	Strong transcription	Stomach Smooth Muscle	stomach
49	chr10:27488400-27512400	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr10:27488600-27528600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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