Variant report

Variant	rs4747590
Chromosome Location	chr10:27490503-27490504
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11015619	0.82[AMR][1000 genomes]
rs11015620	0.82[AMR][1000 genomes]
rs12411593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12411672	0.82[AMR][1000 genomes]
rs12415447	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12571272	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16916444	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16927573	0.80[AMR][1000 genomes]
rs4747592	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4747594	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs56352097	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61149145	0.88[AMR][1000 genomes]
rs73598046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73598048	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7900533	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7918793	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7919198	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422253	chr10:27431366-27575370	Strong transcription Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3337781	chr10:27472216-27666703	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv894980	chr10:27477285-27526531	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27445400-27490800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:27446400-27490800	Weak transcription	Fetal Brain Male	brain
3	chr10:27446400-27499200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:27446400-27508400	Weak transcription	Small Intestine	intestine
5	chr10:27455000-27494600	Weak transcription	Aorta	Aorta
6	chr10:27455000-27495200	Weak transcription	Right Ventricle	heart
7	chr10:27455400-27492200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr10:27455600-27494600	Weak transcription	Pancreas	Pancrea
9	chr10:27456200-27490800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr10:27456200-27496800	Weak transcription	Esophagus	oesophagus
11	chr10:27464800-27492800	Weak transcription	HSMMtube	muscle
12	chr10:27469800-27490600	Weak transcription	Gastric	stomach
13	chr10:27473200-27524200	Weak transcription	Stomach Mucosa	stomach
14	chr10:27474200-27490600	Weak transcription	Brain Anterior Caudate	brain
15	chr10:27474200-27490800	Weak transcription	Fetal Kidney	kidney
16	chr10:27474200-27494400	Weak transcription	NHEK	skin
17	chr10:27474200-27512000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr10:27474400-27492800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr10:27475600-27490800	Weak transcription	Brain Cingulate Gyrus	brain
20	chr10:27475600-27528600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr10:27476000-27490600	Weak transcription	Fetal Lung	lung
22	chr10:27476000-27490800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr10:27476000-27492800	Weak transcription	Hela-S3	cervix
24	chr10:27476200-27492000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr10:27476200-27493000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr10:27476200-27528600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr10:27476400-27499000	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr10:27476600-27492800	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr10:27476600-27492800	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr10:27476600-27494600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr10:27477000-27496400	Weak transcription	HSMM	muscle
32	chr10:27477200-27490600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr10:27478000-27493000	Weak transcription	K562	blood
34	chr10:27480000-27492800	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr10:27481600-27492800	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr10:27481600-27492800	Weak transcription	Brain Substantia Nigra	brain
37	chr10:27481600-27492800	Weak transcription	HMEC	breast
38	chr10:27481600-27527800	Weak transcription	Psoas Muscle	Psoas
39	chr10:27481800-27491800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr10:27481800-27492800	Weak transcription	NHDF-Ad	bronchial
41	chr10:27481800-27498000	Weak transcription	NHLF	lung
42	chr10:27481800-27499200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr10:27482600-27492000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr10:27482600-27512600	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr10:27483800-27512200	Strong transcription	Liver	Liver
46	chr10:27484000-27512400	Strong transcription	Primary B cells from peripheral blood	blood
47	chr10:27484000-27512400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr10:27484000-27512400	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr10:27484000-27512600	Strong transcription	Primary monocytes fromperipheralblood	blood
50	chr10:27484200-27512400	Strong transcription	Primary T helper cells fromperipheralblood	blood

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