Variant report

Variant	rs12572951
Chromosome Location	chr10:28348131-28348132
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10218924	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10826388	0.97[EUR][1000 genomes]
rs11006807	0.96[EUR][1000 genomes]
rs11006808	0.87[EUR][1000 genomes]
rs11006862	1.00[JPT][hapmap]
rs61845091	0.98[EUR][1000 genomes]
rs61845092	0.98[EUR][1000 genomes]
rs61845094	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72801850	0.98[EUR][1000 genomes]
rs7903206	0.82[ASW][hapmap];0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs7919932	0.84[CEU][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv831815	chr10:28235661-28407533	Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1052182	chr10:28259142-28361830	Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1042524	chr10:28290149-28506812	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv831816	chr10:28304698-28493635	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv894988	chr10:28337570-28410989	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
7	nsv525448	chr10:28337570-28563732	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
8	nsv466855	chr10:28341783-28400835	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
9	nsv550284	chr10:28341783-28400835	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28336200-28349400	Weak transcription	Gastric	stomach
2	chr10:28341200-28350000	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr10:28341200-28377600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr10:28341800-28348600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr10:28341800-28349000	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr10:28341800-28349800	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr10:28342400-28348400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr10:28342600-28350000	Strong transcription	Primary T helper cells fromperipheralblood	blood
9	chr10:28344000-28355600	Weak transcription	Adipose Nuclei	Adipose
10	chr10:28344200-28348600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr10:28344200-28349000	Weak transcription	Colon Smooth Muscle	Colon
12	chr10:28344600-28348200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr10:28344600-28348400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:28344600-28348400	Strong transcription	Primary T helper cells PMA-I stimulated	--
15	chr10:28344600-28348600	Weak transcription	Osteobl	bone
16	chr10:28344600-28364400	Weak transcription	Fetal Heart	heart
17	chr10:28345000-28348200	Strong transcription	Fetal Intestine Small	intestine
18	chr10:28345000-28348400	Strong transcription	Primary T cells from cord blood	blood
19	chr10:28345000-28348400	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr10:28345000-28348600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:28345000-28354000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr10:28345400-28348200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
23	chr10:28345600-28349600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr10:28346200-28375400	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr10:28346400-28350200	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr10:28346600-28349200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr10:28346600-28355600	Weak transcription	HSMMtube	muscle
28	chr10:28346600-28364400	Weak transcription	HepG2	liver
29	chr10:28346800-28349200	Weak transcription	HSMM	muscle
30	chr10:28346800-28349400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr10:28346800-28349400	Weak transcription	Rectal Smooth Muscle	rectum
32	chr10:28347000-28348400	Weak transcription	Thymus	Thymus
33	chr10:28347000-28348600	Weak transcription	Ovary	ovary
34	chr10:28347000-28349200	Weak transcription	Aorta	Aorta
35	chr10:28347000-28349400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr10:28347000-28349600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr10:28347000-28353600	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr10:28347000-28355600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr10:28347000-28355600	Weak transcription	Primary hematopoietic stem cells	blood
40	chr10:28347000-28355600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr10:28347000-28361200	Weak transcription	Lung	lung
42	chr10:28347000-28363800	Weak transcription	Fetal Stomach	stomach
43	chr10:28347000-28364000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr10:28347000-28364000	Weak transcription	Pancreas	Pancrea
45	chr10:28347000-28364200	Weak transcription	Esophagus	oesophagus
46	chr10:28347000-28364600	Weak transcription	Duodenum Mucosa	Duodenum
47	chr10:28347000-28375200	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr10:28347000-28380400	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr10:28347000-28381000	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr10:28347000-28412200	Weak transcription	Left Ventricle	heart

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