Variant report

Variant	rs61845094
Chromosome Location	chr10:28345336-28345337
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10218924	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10826388	0.97[EUR][1000 genomes]
rs11006807	0.96[EUR][1000 genomes]
rs11006808	0.87[EUR][1000 genomes]
rs12572951	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61845091	0.98[EUR][1000 genomes]
rs61845092	0.98[EUR][1000 genomes]
rs72801850	0.98[EUR][1000 genomes]
rs7903206	0.86[EUR][1000 genomes]
rs7919932	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv831815	chr10:28235661-28407533	Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1052182	chr10:28259142-28361830	Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1042524	chr10:28290149-28506812	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv831816	chr10:28304698-28493635	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv894988	chr10:28337570-28410989	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
7	nsv525448	chr10:28337570-28563732	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
8	nsv466855	chr10:28341783-28400835	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
9	nsv550284	chr10:28341783-28400835	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28335000-28345800	Weak transcription	Brain Angular Gyrus	brain
2	chr10:28336200-28349400	Weak transcription	Gastric	stomach
3	chr10:28336400-28346000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr10:28336600-28345600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr10:28336800-28346600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr10:28337400-28347400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr10:28337800-28346000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr10:28341200-28350000	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr10:28341200-28377600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr10:28341400-28346400	Weak transcription	Spleen	Spleen
11	chr10:28341800-28348600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr10:28341800-28349000	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr10:28341800-28349800	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr10:28342400-28348400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr10:28342600-28350000	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr10:28342800-28347000	Weak transcription	HMEC	breast
17	chr10:28343200-28345400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr10:28343600-28345400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr10:28343600-28345800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr10:28343600-28346200	Weak transcription	Fetal Intestine Large	intestine
21	chr10:28343600-28346400	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr10:28343600-28346600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr10:28343800-28345600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr10:28343800-28345800	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr10:28343800-28346000	Weak transcription	HepG2	liver
26	chr10:28343800-28346200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:28343800-28346600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr10:28344000-28346000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr10:28344000-28346000	Weak transcription	Rectal Smooth Muscle	rectum
30	chr10:28344000-28346000	Weak transcription	HSMMtube	muscle
31	chr10:28344000-28346200	Weak transcription	Ovary	ovary
32	chr10:28344000-28355600	Weak transcription	Adipose Nuclei	Adipose
33	chr10:28344200-28346200	Weak transcription	HSMM	muscle
34	chr10:28344200-28346400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr10:28344200-28348600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr10:28344200-28349000	Weak transcription	Colon Smooth Muscle	Colon
37	chr10:28344400-28346000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr10:28344400-28346000	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr10:28344400-28347400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr10:28344600-28346200	Weak transcription	Duodenum Mucosa	Duodenum
41	chr10:28344600-28348200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr10:28344600-28348400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr10:28344600-28348400	Strong transcription	Primary T helper cells PMA-I stimulated	--
44	chr10:28344600-28348600	Weak transcription	Osteobl	bone
45	chr10:28344600-28364400	Weak transcription	Fetal Heart	heart
46	chr10:28344800-28346600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr10:28344800-28347000	Strong transcription	Rectal Mucosa Donor 29	rectum
48	chr10:28344800-28347600	Strong transcription	Skeletal Muscle Female	skeletal muscle
49	chr10:28345000-28345400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr10:28345000-28345600	Weak transcription	Hela-S3	cervix

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