Variant report

Variant	rs12574525
Chromosome Location	chr11:36215938-36215939
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36215356..36218000-chr11:36222542..36225082,2	K562	blood:

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs11033500	0.81[ASN][1000 genomes]
rs11033501	0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11033503	0.87[AMR][1000 genomes]
rs11033504	0.85[AMR][1000 genomes]
rs11600365	0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11601619	0.89[CEU][hapmap];0.83[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11602141	0.89[CEU][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11602754	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11604998	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11605921	0.92[AMR][1000 genomes]
rs11605927	0.92[AMR][1000 genomes]
rs11605931	0.81[ASN][1000 genomes]
rs11605941	0.92[AMR][1000 genomes]
rs11606074	1.00[CEU][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11826136	0.80[YRI][hapmap]
rs12420852	0.83[JPT][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12421151	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12421199	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12421400	0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12574172	0.92[AMR][1000 genomes]
rs12574173	0.92[AMR][1000 genomes]
rs12574419	0.85[AMR][1000 genomes]
rs12575304	0.92[AMR][1000 genomes]
rs12575540	0.92[AMR][1000 genomes]
rs12575617	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12575645	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12577437	0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1374376	0.87[ASN][1000 genomes]
rs1405095	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16928496	0.89[YRI][hapmap]
rs16928506	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16928509	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16928510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16928513	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16928514	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16928552	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34892666	0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs3812769	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3812771	0.89[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3812772	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3980393	0.87[ASN][1000 genomes]
rs4417242	0.92[AMR][1000 genomes]
rs4417243	0.92[AMR][1000 genomes]
rs4468324	0.92[AMR][1000 genomes]
rs4611176	0.92[AMR][1000 genomes]
rs58048041	0.92[AMR][1000 genomes]
rs58356552	0.92[AMR][1000 genomes]
rs58648806	0.87[AMR][1000 genomes]
rs58707777	0.92[AMR][1000 genomes]
rs59051429	0.92[AMR][1000 genomes]
rs59137935	0.92[AMR][1000 genomes]
rs60008257	0.92[AMR][1000 genomes]
rs60544801	0.87[AMR][1000 genomes]
rs60759289	0.92[AMR][1000 genomes]
rs61254236	0.88[AMR][1000 genomes]
rs61879011	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61879013	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61879034	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879035	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879036	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879037	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61879038	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61879039	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61879040	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61879041	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61881463	0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs61881464	0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs61881465	0.92[AMR][1000 genomes]
rs61881468	0.92[AMR][1000 genomes]
rs61881469	0.92[AMR][1000 genomes]
rs61881470	0.92[AMR][1000 genomes]
rs61881476	0.92[AMR][1000 genomes]
rs61881477	0.87[AMR][1000 genomes]
rs61881478	0.87[AMR][1000 genomes]
rs6416084	0.84[JPT][hapmap]
rs72937449	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72937454	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72937494	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72941791	0.92[AMR][1000 genomes]
rs872534	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs940923	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv897225	chr11:36136912-36244190	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36184400-36220000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:36200400-36223800	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr11:36201400-36217400	Weak transcription	Ovary	ovary
4	chr11:36202200-36217200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:36203400-36218000	Weak transcription	NHLF	lung
6	chr11:36204400-36217200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:36204800-36217400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:36206800-36219400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr11:36207800-36217200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr11:36207800-36222800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr11:36208000-36217200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr11:36208200-36217400	Weak transcription	Brain Hippocampus Middle	brain
13	chr11:36208200-36217400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr11:36208200-36217400	Weak transcription	Fetal Kidney	kidney
15	chr11:36208400-36216000	Weak transcription	Fetal Lung	lung
16	chr11:36208400-36217200	Weak transcription	Brain Cingulate Gyrus	brain
17	chr11:36208400-36217200	Weak transcription	Fetal Brain Male	brain
18	chr11:36208400-36217400	Weak transcription	Adipose Nuclei	Adipose
19	chr11:36208400-36220000	Weak transcription	Esophagus	oesophagus
20	chr11:36208600-36216400	Weak transcription	Brain Germinal Matrix	brain
21	chr11:36208600-36216800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr11:36208600-36219000	Weak transcription	HSMM	muscle
23	chr11:36208600-36219400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr11:36208600-36220000	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr11:36208600-36220000	Weak transcription	NHEK	skin
26	chr11:36208600-36231600	Weak transcription	HMEC	breast
27	chr11:36209600-36219200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr11:36211800-36219000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr11:36212400-36225800	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr11:36212600-36219000	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr11:36214000-36217200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:36214000-36217400	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr11:36214600-36216800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr11:36214600-36217400	Weak transcription	Fetal Heart	heart
35	chr11:36214600-36219400	Weak transcription	Fetal Intestine Small	intestine
36	chr11:36214800-36219600	Weak transcription	Fetal Intestine Large	intestine
37	chr11:36214800-36219600	Weak transcription	HSMMtube	muscle
38	chr11:36215000-36216000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr11:36215000-36216600	Weak transcription	Fetal Stomach	stomach
40	chr11:36215000-36216800	Weak transcription	Fetal Brain Female	brain
41	chr11:36215000-36217800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr11:36215000-36219000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr11:36215000-36219600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr11:36215200-36219000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr11:36215400-36216200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr11:36215400-36217200	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr11:36215400-36218400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr11:36215600-36216000	Genic enhancers	Fetal Muscle Leg	muscle
49	chr11:36215800-36216600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr11:36215800-36216600	Enhancers	Psoas Muscle	Psoas

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