Variant report

Variant	rs12574419
Chromosome Location	chr11:36243252-36243253
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs11033500	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11033501	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11033503	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11033504	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11033508	0.80[EUR][1000 genomes]
rs11551023	0.89[CEU][hapmap];0.80[CHB][hapmap];0.86[CHD][hapmap];0.92[GIH][hapmap];0.85[EUR][1000 genomes]
rs11600365	1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11601619	0.89[CEU][hapmap];0.86[CHB][hapmap];0.85[CHD][hapmap];0.83[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11602141	0.89[CEU][hapmap];0.81[CHD][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11602754	0.85[AMR][1000 genomes]
rs11603025	0.85[EUR][1000 genomes]
rs11603810	0.89[CEU][hapmap];0.80[CHB][hapmap];0.96[CHD][hapmap];0.92[GIH][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11604341	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11604381	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11604397	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11604998	0.81[JPT][hapmap];0.82[AMR][1000 genomes]
rs11605921	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11605927	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11605931	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11605941	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11606074	0.82[CEU][hapmap];0.85[AMR][1000 genomes]
rs11606476	0.83[EUR][1000 genomes]
rs11606598	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11607231	0.85[EUR][1000 genomes]
rs12420852	1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12421151	1.00[CEU][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12421199	1.00[CEU][hapmap];0.80[CHD][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12421400	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12574172	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12574173	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12574525	0.85[AMR][1000 genomes]
rs12575304	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12575540	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12575617	0.85[AMR][1000 genomes]
rs12575645	0.85[AMR][1000 genomes]
rs12577437	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1374376	0.86[CHB][hapmap];0.92[CHD][hapmap];0.85[ASN][1000 genomes]
rs1405095	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1526058	0.85[EUR][1000 genomes]
rs1526059	0.85[EUR][1000 genomes]
rs16928506	0.85[AMR][1000 genomes]
rs16928509	0.85[AMR][1000 genomes]
rs16928510	0.92[GIH][hapmap];0.85[AMR][1000 genomes]
rs16928513	0.89[CEU][hapmap];0.92[GIH][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16928514	0.89[CEU][hapmap];0.92[GIH][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16928552	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2289980	0.89[CEU][hapmap];0.80[CHB][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2289981	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34213469	0.85[EUR][1000 genomes]
rs34892666	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3812769	0.89[CEU][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3812771	0.89[CEU][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3812772	0.89[CEU][hapmap];0.92[GIH][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3980393	0.86[CHB][hapmap];0.85[ASN][1000 genomes]
rs4417242	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4417243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4468324	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4485080	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4611176	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58048041	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58356552	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58648806	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58707777	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59051429	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59137935	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59307065	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60008257	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60544801	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60759289	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60823142	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61254236	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879011	0.85[AMR][1000 genomes]
rs61879013	0.85[AMR][1000 genomes]
rs61879034	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61879035	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61879036	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61879037	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61879038	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61879039	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61879040	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61879041	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61879261	0.85[EUR][1000 genomes]
rs61879262	0.85[EUR][1000 genomes]
rs61879263	0.82[EUR][1000 genomes]
rs61879264	0.85[EUR][1000 genomes]
rs61879265	0.85[EUR][1000 genomes]
rs61879266	0.85[EUR][1000 genomes]
rs61879267	0.85[EUR][1000 genomes]
rs61879268	0.85[EUR][1000 genomes]
rs61879269	0.85[EUR][1000 genomes]
rs61879270	0.85[EUR][1000 genomes]
rs61879271	0.85[EUR][1000 genomes]
rs61879272	0.85[EUR][1000 genomes]
rs61879273	0.85[EUR][1000 genomes]
rs61879274	0.85[EUR][1000 genomes]
rs61879275	0.85[EUR][1000 genomes]
rs61879277	0.83[EUR][1000 genomes]
rs61879278	0.83[EUR][1000 genomes]
rs61881463	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61881464	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61881465	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61881468	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61881469	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61881470	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61881476	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61881477	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61881478	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61881481	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61881484	0.85[EUR][1000 genomes]
rs61881485	0.85[EUR][1000 genomes]
rs61881486	0.85[EUR][1000 genomes]
rs61881487	0.85[EUR][1000 genomes]
rs7110064	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72937449	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72937454	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72937494	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72941791	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs872534	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs921085	0.85[EUR][1000 genomes]
rs940923	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv897225	chr11:36136912-36244190	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36218000-36252200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:36219200-36248600	Weak transcription	Ovary	ovary
3	chr11:36221400-36248800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr11:36222800-36248800	Weak transcription	HSMMtube	muscle
5	chr11:36234000-36244600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr11:36234800-36248800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:36234800-36254000	Weak transcription	Right Atrium	heart
8	chr11:36235800-36260400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:36236800-36273200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:36237000-36248600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr11:36237000-36248600	Weak transcription	Esophagus	oesophagus
12	chr11:36237800-36244400	Weak transcription	Fetal Kidney	kidney
13	chr11:36237800-36248600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:36237800-36250600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr11:36238600-36248800	Weak transcription	Fetal Intestine Large	intestine
16	chr11:36239800-36252200	Weak transcription	Hela-S3	cervix
17	chr11:36240400-36253800	Weak transcription	Psoas Muscle	Psoas
18	chr11:36242000-36247000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr11:36242000-36249000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr11:36242000-36249200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr11:36242000-36249800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:36242200-36248200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr11:36242200-36248600	Weak transcription	Fetal Muscle Trunk	muscle
24	chr11:36242200-36249000	Weak transcription	HSMM	muscle
25	chr11:36242400-36244000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr11:36242400-36244200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:36242400-36245200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr11:36242400-36247800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:36242600-36245800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr11:36243000-36243800	Enhancers	Cortex derived primary cultured neurospheres	brain

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