Variant report

Variant	rs61879034
Chromosome Location	chr11:36218896-36218897
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 124 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs11033500	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11033501	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11033503	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11033504	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11033508	0.80[EUR][1000 genomes]
rs11551023	0.85[EUR][1000 genomes]
rs11600365	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11601619	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11602141	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11602754	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11603025	0.85[EUR][1000 genomes]
rs11603810	0.85[EUR][1000 genomes]
rs11604341	0.85[EUR][1000 genomes]
rs11604381	0.85[EUR][1000 genomes]
rs11604397	0.85[EUR][1000 genomes]
rs11604998	0.92[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11605921	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11605927	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11605931	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11605941	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11606074	0.96[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11606476	0.83[EUR][1000 genomes]
rs11606598	0.85[EUR][1000 genomes]
rs11607231	0.85[EUR][1000 genomes]
rs12420852	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12421151	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12421199	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12421400	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12574172	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12574173	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12574419	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12574525	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12575304	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12575540	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12575617	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12575645	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12577437	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1374376	0.87[ASN][1000 genomes]
rs1405095	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1526058	0.85[EUR][1000 genomes]
rs1526059	0.85[EUR][1000 genomes]
rs16928506	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16928509	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16928510	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16928513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16928514	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16928552	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2289980	0.85[EUR][1000 genomes]
rs2289981	0.85[EUR][1000 genomes]
rs34213469	0.85[EUR][1000 genomes]
rs34892666	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3812769	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3812771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3812772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3980393	0.87[ASN][1000 genomes]
rs4417242	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4417243	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4468324	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4485080	0.90[EUR][1000 genomes]
rs4611176	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58048041	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58356552	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58648806	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58707777	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59051429	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59137935	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59307065	0.85[EUR][1000 genomes]
rs60008257	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60544801	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60759289	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60823142	0.85[EUR][1000 genomes]
rs61254236	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61879011	0.96[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs61879013	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61879035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879037	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61879038	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61879039	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61879040	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61879041	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61879261	0.85[EUR][1000 genomes]
rs61879262	0.85[EUR][1000 genomes]
rs61879263	0.82[EUR][1000 genomes]
rs61879264	0.85[EUR][1000 genomes]
rs61879265	0.85[EUR][1000 genomes]
rs61879266	0.85[EUR][1000 genomes]
rs61879267	0.85[EUR][1000 genomes]
rs61879268	0.85[EUR][1000 genomes]
rs61879269	0.85[EUR][1000 genomes]
rs61879270	0.85[EUR][1000 genomes]
rs61879271	0.85[EUR][1000 genomes]
rs61879272	0.85[EUR][1000 genomes]
rs61879273	0.85[EUR][1000 genomes]
rs61879274	0.85[EUR][1000 genomes]
rs61879275	0.85[EUR][1000 genomes]
rs61879277	0.83[EUR][1000 genomes]
rs61879278	0.83[EUR][1000 genomes]
rs61879279	0.85[EUR][1000 genomes]
rs61881463	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61881464	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61881465	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61881468	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61881469	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61881470	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61881476	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61881477	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61881478	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61881481	0.85[EUR][1000 genomes]
rs61881484	0.85[EUR][1000 genomes]
rs61881485	0.85[EUR][1000 genomes]
rs61881486	0.85[EUR][1000 genomes]
rs61881487	0.85[EUR][1000 genomes]
rs7110064	0.89[EUR][1000 genomes]
rs72937449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72937454	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72937494	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72941791	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs872534	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs921085	0.85[EUR][1000 genomes]
rs940923	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv897225	chr11:36136912-36244190	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36184400-36220000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:36200400-36223800	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr11:36206800-36219400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr11:36207800-36222800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:36208400-36220000	Weak transcription	Esophagus	oesophagus
6	chr11:36208600-36219000	Weak transcription	HSMM	muscle
7	chr11:36208600-36219400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:36208600-36220000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr11:36208600-36220000	Weak transcription	NHEK	skin
10	chr11:36208600-36231600	Weak transcription	HMEC	breast
11	chr11:36209600-36219200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:36211800-36219000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:36212400-36225800	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr11:36212600-36219000	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr11:36214600-36219400	Weak transcription	Fetal Intestine Small	intestine
16	chr11:36214800-36219600	Weak transcription	Fetal Intestine Large	intestine
17	chr11:36214800-36219600	Weak transcription	HSMMtube	muscle
18	chr11:36215000-36219000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr11:36215000-36219600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr11:36215200-36219000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr11:36215800-36219600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr11:36216000-36219200	Enhancers	Fetal Lung	lung
23	chr11:36216000-36219200	Enhancers	Fetal Muscle Leg	muscle
24	chr11:36216600-36219200	Enhancers	Fetal Stomach	stomach
25	chr11:36216600-36231600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr11:36216800-36219200	Enhancers	Brain Substantia Nigra	brain
27	chr11:36216800-36219200	Enhancers	Fetal Brain Female	brain
28	chr11:36217000-36219000	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr11:36217000-36219000	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr11:36217200-36219200	Enhancers	Fetal Brain Male	brain
31	chr11:36217400-36219000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr11:36217400-36219000	Enhancers	Fetal Heart	heart
33	chr11:36217400-36219200	Enhancers	Ovary	ovary
34	chr11:36217400-36219400	Enhancers	Adipose Nuclei	Adipose
35	chr11:36217400-36219400	Enhancers	Fetal Kidney	kidney
36	chr11:36217400-36222400	Weak transcription	Left Ventricle	heart
37	chr11:36217600-36220600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr11:36217600-36223000	Weak transcription	Colon Smooth Muscle	Colon
39	chr11:36217800-36226400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr11:36218000-36222400	Weak transcription	Brain Anterior Caudate	brain
41	chr11:36218000-36233400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr11:36218000-36252200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr11:36218200-36219200	Enhancers	NHDF-Ad	bronchial
44	chr11:36218200-36219400	Enhancers	Rectal Smooth Muscle	rectum
45	chr11:36218200-36227000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr11:36218200-36233000	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr11:36218400-36219000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr11:36218400-36219000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr11:36218400-36219200	Enhancers	Brain Germinal Matrix	brain
50	chr11:36218400-36219400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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