Variant report

Variant	rs11033508
Chromosome Location	chr11:36262540-36262541
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs11033500	0.85[TSI][hapmap];0.84[EUR][1000 genomes]
rs11033501	1.00[ASW][hapmap];0.85[TSI][hapmap];0.84[EUR][1000 genomes]
rs11033503	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11033504	0.84[TSI][hapmap];0.84[EUR][1000 genomes]
rs11551023	1.00[ASW][hapmap];0.80[CEU][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11600365	0.81[EUR][1000 genomes]
rs11602141	1.00[ASW][hapmap];0.81[TSI][hapmap]
rs11603025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11603810	1.00[ASW][hapmap];0.80[CEU][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11604341	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11604381	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11604397	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11605921	0.84[EUR][1000 genomes]
rs11605927	0.84[EUR][1000 genomes]
rs11605931	0.84[EUR][1000 genomes]
rs11605941	0.84[EUR][1000 genomes]
rs11606116	0.85[MEX][hapmap]
rs11606476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11606598	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11607231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12420852	0.81[EUR][1000 genomes]
rs12421151	0.81[EUR][1000 genomes]
rs12421199	1.00[ASW][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes]
rs12421400	0.84[EUR][1000 genomes]
rs12574172	0.84[EUR][1000 genomes]
rs12574173	0.84[EUR][1000 genomes]
rs12574419	0.80[EUR][1000 genomes]
rs12575304	0.84[EUR][1000 genomes]
rs12575540	0.84[EUR][1000 genomes]
rs12577437	0.84[EUR][1000 genomes]
rs1405095	0.81[EUR][1000 genomes]
rs1446672	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1526058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1526059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16928513	0.81[TSI][hapmap];0.80[EUR][1000 genomes]
rs16928514	0.81[TSI][hapmap];0.80[EUR][1000 genomes]
rs16928552	0.81[EUR][1000 genomes]
rs2289980	0.80[CEU][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2289981	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34213469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34892666	0.84[EUR][1000 genomes]
rs3812769	0.80[EUR][1000 genomes]
rs3812771	0.80[EUR][1000 genomes]
rs3812772	0.81[TSI][hapmap];0.80[EUR][1000 genomes]
rs4417242	0.84[EUR][1000 genomes]
rs4417243	0.84[EUR][1000 genomes]
rs4468324	0.84[EUR][1000 genomes]
rs4485080	0.85[TSI][hapmap];0.84[EUR][1000 genomes]
rs4611176	0.84[EUR][1000 genomes]
rs58048041	0.84[EUR][1000 genomes]
rs58356552	0.84[EUR][1000 genomes]
rs58648806	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58707777	0.84[EUR][1000 genomes]
rs59051429	0.84[EUR][1000 genomes]
rs59137935	0.84[EUR][1000 genomes]
rs59307065	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60008257	0.84[EUR][1000 genomes]
rs60544801	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs60759289	0.84[EUR][1000 genomes]
rs60823142	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61254236	0.81[EUR][1000 genomes]
rs61627540	0.85[AMR][1000 genomes]
rs61879034	0.80[EUR][1000 genomes]
rs61879035	0.80[EUR][1000 genomes]
rs61879036	0.80[EUR][1000 genomes]
rs61879038	0.81[EUR][1000 genomes]
rs61879039	0.81[EUR][1000 genomes]
rs61879040	0.81[EUR][1000 genomes]
rs61879041	0.81[EUR][1000 genomes]
rs61879261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879264	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879265	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879266	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879267	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61879268	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879269	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61879274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61879275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879277	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61879278	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61879279	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61881463	0.84[EUR][1000 genomes]
rs61881464	0.84[EUR][1000 genomes]
rs61881465	0.84[EUR][1000 genomes]
rs61881468	0.84[EUR][1000 genomes]
rs61881469	0.84[EUR][1000 genomes]
rs61881470	0.84[EUR][1000 genomes]
rs61881476	0.84[EUR][1000 genomes]
rs61881477	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61881478	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61881481	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61881484	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61881485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61881486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61881487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7110064	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72937449	0.80[EUR][1000 genomes]
rs72937454	0.80[EUR][1000 genomes]
rs72937494	0.81[EUR][1000 genomes]
rs72939309	0.89[AMR][1000 genomes]
rs72941791	0.84[EUR][1000 genomes]
rs872534	1.00[ASW][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes]
rs921085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs940923	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36236800-36273200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:36249000-36262800	Weak transcription	Spleen	Spleen
3	chr11:36250800-36270600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:36252200-36270600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:36252200-36277800	Weak transcription	Esophagus	oesophagus
6	chr11:36253800-36270400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:36254400-36265400	Weak transcription	Fetal Muscle Leg	muscle
8	chr11:36255000-36264600	Weak transcription	Fetal Stomach	stomach
9	chr11:36255000-36273000	Weak transcription	Brain Germinal Matrix	brain
10	chr11:36257600-36270400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr11:36257800-36271600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:36260800-36263000	Enhancers	Fetal Brain Female	brain
13	chr11:36260800-36263600	Enhancers	Fetal Brain Male	brain
14	chr11:36261200-36263000	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr11:36262000-36263000	Enhancers	HSMMtube	muscle
16	chr11:36262200-36262600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr11:36262400-36271600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links