Variant report

Variant	rs61879262
Chromosome Location	chr11:36257328-36257329
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs11033500	0.89[EUR][1000 genomes]
rs11033501	0.89[EUR][1000 genomes]
rs11033503	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11033504	0.89[EUR][1000 genomes]
rs11033508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11551023	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11600365	0.86[EUR][1000 genomes]
rs11601619	0.82[EUR][1000 genomes]
rs11602141	0.82[EUR][1000 genomes]
rs11603025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11603810	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11604341	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11604381	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11604397	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11605921	0.89[EUR][1000 genomes]
rs11605927	0.89[EUR][1000 genomes]
rs11605931	0.89[EUR][1000 genomes]
rs11605941	0.89[EUR][1000 genomes]
rs11606476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11606598	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11607231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12420852	0.86[EUR][1000 genomes]
rs12421151	0.86[EUR][1000 genomes]
rs12421199	0.86[EUR][1000 genomes]
rs12421400	0.89[EUR][1000 genomes]
rs12574172	0.89[EUR][1000 genomes]
rs12574173	0.89[EUR][1000 genomes]
rs12574419	0.85[EUR][1000 genomes]
rs12575304	0.89[EUR][1000 genomes]
rs12575540	0.89[EUR][1000 genomes]
rs12577437	0.89[EUR][1000 genomes]
rs1405095	0.86[EUR][1000 genomes]
rs1446672	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1526058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1526059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16928513	0.85[EUR][1000 genomes]
rs16928514	0.85[EUR][1000 genomes]
rs16928552	0.86[EUR][1000 genomes]
rs2289980	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2289981	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34213469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34892666	0.89[EUR][1000 genomes]
rs3812769	0.85[EUR][1000 genomes]
rs3812771	0.85[EUR][1000 genomes]
rs3812772	0.85[EUR][1000 genomes]
rs4417242	0.89[EUR][1000 genomes]
rs4417243	0.89[EUR][1000 genomes]
rs4468324	0.89[EUR][1000 genomes]
rs4485080	0.89[EUR][1000 genomes]
rs4611176	0.89[EUR][1000 genomes]
rs58048041	0.89[EUR][1000 genomes]
rs58356552	0.89[EUR][1000 genomes]
rs58648806	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58707777	0.89[EUR][1000 genomes]
rs59051429	0.89[EUR][1000 genomes]
rs59137935	0.89[EUR][1000 genomes]
rs59307065	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60008257	0.89[EUR][1000 genomes]
rs60544801	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60759289	0.89[EUR][1000 genomes]
rs60823142	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61254236	0.86[EUR][1000 genomes]
rs61627540	0.85[AMR][1000 genomes]
rs61879034	0.85[EUR][1000 genomes]
rs61879035	0.85[EUR][1000 genomes]
rs61879036	0.85[EUR][1000 genomes]
rs61879037	0.83[EUR][1000 genomes]
rs61879038	0.86[EUR][1000 genomes]
rs61879039	0.86[EUR][1000 genomes]
rs61879040	0.86[EUR][1000 genomes]
rs61879041	0.86[EUR][1000 genomes]
rs61879261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879264	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879265	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879266	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879267	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61879268	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879269	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61879274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61879275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879277	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61879278	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61879279	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61881463	0.89[EUR][1000 genomes]
rs61881464	0.89[EUR][1000 genomes]
rs61881465	0.89[EUR][1000 genomes]
rs61881468	0.89[EUR][1000 genomes]
rs61881469	0.89[EUR][1000 genomes]
rs61881470	0.89[EUR][1000 genomes]
rs61881476	0.89[EUR][1000 genomes]
rs61881477	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61881478	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61881481	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61881484	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61881485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61881486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61881487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7110064	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72937449	0.85[EUR][1000 genomes]
rs72937454	0.85[EUR][1000 genomes]
rs72937494	0.86[EUR][1000 genomes]
rs72939309	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72941791	0.89[EUR][1000 genomes]
rs872534	0.86[EUR][1000 genomes]
rs921085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs940923	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36235800-36260400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:36236800-36273200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:36245000-36260800	Weak transcription	Fetal Brain Male	brain
4	chr11:36245200-36261400	Weak transcription	NHEK	skin
5	chr11:36246800-36257400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:36248800-36257600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:36249000-36262800	Weak transcription	Spleen	Spleen
8	chr11:36249600-36259800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr11:36250800-36257400	Weak transcription	HMEC	breast
10	chr11:36250800-36270600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr11:36251000-36258000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:36252200-36260800	Weak transcription	Fetal Intestine Small	intestine
13	chr11:36252200-36270600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:36252200-36277800	Weak transcription	Esophagus	oesophagus
15	chr11:36252600-36257400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr11:36253600-36257400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr11:36253600-36257400	Weak transcription	NH-A	brain
18	chr11:36253600-36262000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:36253800-36270400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr11:36254000-36257800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:36254000-36258400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr11:36254000-36259000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:36254200-36258600	Weak transcription	Fetal Lung	lung
24	chr11:36254400-36258600	Weak transcription	Fetal Kidney	kidney
25	chr11:36254400-36259400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr11:36254400-36262000	Weak transcription	HSMM	muscle
27	chr11:36254400-36262000	Weak transcription	HSMMtube	muscle
28	chr11:36254400-36265400	Weak transcription	Fetal Muscle Leg	muscle
29	chr11:36254800-36260400	Weak transcription	Fetal Muscle Trunk	muscle
30	chr11:36255000-36264600	Weak transcription	Fetal Stomach	stomach
31	chr11:36255000-36273000	Weak transcription	Brain Germinal Matrix	brain
32	chr11:36255200-36257600	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr11:36256800-36257600	Enhancers	Ovary	ovary
34	chr11:36257000-36257600	Enhancers	Muscle Satellite Cultured Cells	--
35	chr11:36257000-36257800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr11:36257000-36257800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr11:36257200-36257600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr11:36257200-36257800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr11:36257200-36259000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr11:36257200-36260000	Weak transcription	A549	lung

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